« Back to Phaseolus vulgaris search


Detailed information on CNT30525480


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y1E6|PIP28_ORYSJ, E-value = 7e-36

BLAST vs NONCODE:
NONBRAT002539, E-value = 1e-10

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728842Phaseolus vulgarisCorchorus capsularis4.1625.6587.6489forward
CNT3070603Phaseolus vulgarisQuercus suber4.3524.4784.9593forward
CNT30404916Phaseolus vulgarisBeta vulgaris4.3923.2186.1794forward
CNT30632211Phaseolus vulgarisVigna unguiculata3.7426.3286.2580forward
CNT30711465Phaseolus vulgarisGlycine max4.9622.786.79106forward
CNT30163276Phaseolus vulgarisPistacia vera5.9441.2383.46127forward
CNT30636643Phaseolus vulgarisCapsicum annuum4.5320.5584.5497forward
CNT3085870Phaseolus vulgarisVigna radiata524.3782.24107forward
CNT30145515Phaseolus vulgarisMedicago truncatula3.5130.6186.6775forward
CNT3062229Phaseolus vulgarisArabidopsis lyrata4.9623.0482.08106forward
CNT30261241Phaseolus vulgarisBrassica rapa3.621.1584.4277forward
CNT30227661Phaseolus vulgarisAnanas comosus5.3850.4483.48115forward
CNT30570969Phaseolus vulgarisVitis vinifera3.4626.9186.4974forward
CNT30704435Phaseolus vulgarisPrunus avium8.5127.5381.87182forward
CNT3024289Phaseolus vulgarisPopulus trichocarpa10.2944.982.73220forward
CNT30319296Phaseolus vulgarisAsparagus officinalis4.5822.1283.6798forward
CNT30120512Phaseolus vulgarisCitrus clementina12.6290.382.22270forward

Expression of CNT30525480

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MNLVCTVPFNHCFQHNSCKQQFPLSTVSVINNVFFKRGA*

>peptide 2 (92 aa)
MRISSIPLGVGSREDSVHQNEGSNDLSTQSNTCAVPITQLIGPTTILVVVSLLEGLNQPNSTYGPQALSHHVHYSPYQRHLPSQEESKSHCRV

>peptide 3 (58 aa)
VIPGLLFVVYDSSSKTSSRVNTSASHWDGCQVNHEHSKPNWQWSQNLPTQNKSTIRNS*

>peptide 4 (46 aa)
MTNEDGAGNSHEICQLGKMAFSMNDTVLNTLILGLKFPHQQRHICF*

>peptide 5 (34 aa)
MNTANPIGSGAKTFQHRTKAQLETHDVVQLKQKM*

>peptide 6 (32 aa)
WSSQAFSLLYMTAAPRLLAGLIPVPVTGMVAK*

>peptide 7 (30 aa)
MEIETDKHLEQMGQAPCEEHGFLSLLIWRI*

Sequence

>CNT30525480
TGGTCATCCCAGGCCTTCTCTTTGTTGTATATGACAGCAGCTCCAAGACTTCTAGCAGGGTTAATACCAGTGCCAGTCACTGGGATGGTTGCCAAGTGAA
CCATGAACACAGCAAACCCAATTGGCAGTGGAGCCAAAACCTTCCAACACAGAACAAAAGCACAATTAGAAACTCATGATGTGGTTCAATTAAAACAAAA
AATGTAGACAAAAAGTTATTCCAAACATATATGAATCGAACTTTATTATTAATATTTTATATTAGGGTCGCTATAACAGTTTCATTGCAATCTTTGATAT
TGTAGGAAATTGTGGATAAGTGTGTGGCTGATGCAACTTCAGCTATGGTCTGAGACTATAAAATGCTAATTAGTGTTGCACTTAAAATTGTGGTTGCAGA
CCCTTTTCTAAAACTTTTTAATATAAAAGGGAAAAAATGGAAATAGAAACCGATAAGCACTTGGAACAGATGGGACAAGCCCCATGTGAGGAGCATGGTT
TCCTTTCTTTATTGATTTGGAGAATCTGAGAAAGTGTATGGAGGAACCTAAAGCTGATAATGACAAATGAGGATGGTGCTGGAAACTCTCACGAGATTTG
CCAGCTTGGGAAAATGGCATTTAGCATGAATGACACTGTTCTGAACACTTTAATTTTAGGCCTTAAATTTCCACATCAACAAAGACACATTTGCTTCTGA
GGCAAAAAATGCAGAAGGAAACTCCTGAAAGAATCCACTTTTCCAAAAAGAAGAAAGAAAACAGATAAGATTCGTGTGATAAGGCTGTGAAAATAAAATC
CTCCACAGAATAATATATGGTAATGGCCTAATGGACCCATATTTGTAAAGAAATGGTAACATTTCACTTCAATAAAAAACATCATGCATTTGGAAATTTT
GGAGAAAGAAAGGGATAGGTTCACCACTCTAGGATGCTTAGATCAATGGAAAATGTAACCTTTAAGTCATGAAATATGCCCACAGGAAAAGGATACCCAC
TTTCTTGTTTTGAGAACAAGAACTAGTAATAAAGGAAAGCCAAGCCAAGCAAGAAAAGTGGAAATTTTCAACTACATTGAATGCTGCCTGCGCAATATTT
ATTACAGAGGAAATCTCTAGATAAAGTAGCCAAAATAAGGATATAGATTCCAAAATGAAAAGGAAATCTAACTGGCTAACATCTTTAACTGTTTCAAGAA
TATTAAAAATAAAGCTTCTATAATTATTAAGGATAGTAAAAATAATAGTAAGCATACATGTTGACTGTGCCAAAACTTTTTATGCAAATGGATAGCACAG
AATTGTAAACTGTATCACTTCAAACGGGAAATTGTTGACTGGCAGCAGGTACAACTTCTCAAAATTGAGTGGTATATTATTTACTAGTTGTGAAGTTCAC
TGAACCAGGAATACACAGTTGATGTGAATCTTGGTAACCATTTCAAGAAATACAACTAATTTTCTTCATTGCTTAAATCCCACTCTACCTAATTTTGCAT
AGAAAGCATAGTTCGATGCTTGAAGTTGAGATATCTAATAATGAGTAATCACTTCCACTCCACTTTTTCTTCACAAATAACCAGTCTAAAGTAATTTCAA
GGAACTTTAAGCTTCTATTTAAAACCAGAAAGAACTAAGAGCGAATCCATGCTTGCTTAAAAGCAGGGCATATGACTATGACTATATGTTATGAACTTGG
TATGCACTGTACCATTTAATCATTGCTTTCAGCACAACTCATGCAAACAACAATTTCCTCTATCTACGGTTAGTGTAATAAACAATGTATTTTTCAAAAG
GGGAGCATAGAAGCAAAACAAGACTACAATTCAATAAATAATTGAGCACATACCGGTACATGAGAATCTCTAGCATTCCTCTTGGGGTCGGTAGCAGAGA
AGACAGTGTACACCAAAACGAAGGTTCCAATGATCTCAGCACCCAATCCAACACCTGTGCTGTACCCATCACTCAGCTCATTGGCCCCACCACCATACTT
GTTGTAGTAAGCCTTTTGGAAGGCCTTAACCAACCCAACTCCACATATGGCCCCCAAGCACTGAGCCACCATGTACATTATAGCCCTTATCAAAGACACC
TTCCGAGCCAAGAAGAGTCCAAAAGTCACTGCAGGGTTT