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Detailed information on CNT30241578


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696247Avena sativaOryza sativa63.7962.6689.75673forward
CNT30284133Avena sativaTriticum aestivum75.8357.5588.75800forward
CNT30555049Avena sativaOryza glaberrima63.7957.1389.9673forward
CNT30656613Avena sativaTriticum dicoccoides63.327691.32668forward
CNT30470687Avena sativaSaccharum spontaneum63.4183.9488.19669forward
CNT30345522Avena sativaEragrostis tef50.7153.8890.65535forward
CNT30363150Avena sativaSorghum bicolor62.7554.7690.18662forward
CNT30596879Avena sativaOryza meridionalis56.354.789.56594forward
CNT30497363Avena sativaDigitaria exilis68.1561.0988.04719forward
CNT30117570Avena sativaOryza nivara63.7964.4689.75673forward
CNT30604592Avena sativaOryza punctata59.2462.6988.48625forward

Expression of CNT30241578

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVTRASPKRADDGRFFTAFPAKAGEESAMAVVAIALTVDVLCALQE*

>peptide 2 (60 aa)
PRSITIPCNEDFCNTVKSQNWSPNLVTCFHRIDPRNLHHGSTSETSCAYFIACMISRTPP*

>peptide 3 (29 aa)
MAHREWITSSSRFLAKVSGSAESPAVSHP*

>peptide 4 (41 aa)
MAGSSPPFRQRPGRRVPWRWSPLLLQLMCCVLSKSEALVCEE

>peptide 5 (79 aa)
MAYLPGTKLVAKAQALLLTGSARWSARFSRGPFPVTMACTKKPNMENMARRPFLSSLTLSSAKASGSSAKPRGSKLPPG*

Sequence

>CNT30241578
CACCAAGATCGATTACTATACCCTGTAATGAAGATTTTTGTAACACGGTGAAATCACAAAATTGGTCTCCAAATCTAGTAACATGTTTTCATAGAATCGA
TCCTCGTAATTTACATCATGGTAGTACAAGCGAAACCAGCTGTGCATACTTCATCGCGTGCATGATCTCTCGGACACCGCCTTAGTGGATGGCTTATTTG
CCGGGAACAAAGTTGGTGGCGAAAGCCCAGGCGTTGTTGTTGACTGGGTCAGCCAGGTGGTCAGCGAGGTTCTCGAGGGGGCCCTTTCCGGTGACGATGG
CCTGCACGAAGAAGCCAAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTAACCTTGAGCTCCGCGAAGGCCTCTGGGTCGTCGGCCAAGCC
GAGGGGGTCGAAGCTGCCACCGGGGTAGAGAGGGTCGACGATCTCACCGAGTGGGCCACCGGCAACGCGGTACCCCTCAACGGCGCCCATGAGCACGACC
TGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGCTTGGGTTGCCGAGGTAGTCGAGGCCTCCCTCGCTGAAGATCTGGGAGCCGGCCTTGA
ACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAACTCAGGGAAGACGCATCCGAGGGCGCCTAGCATGGCCCACCGAGAGTGGATCACCTC
GAGCTCCCGGTTCTTGGCAAAGGTCTCGGGGTCGGCCGAGAGCCCGGCGGTGTCCCACCCGTAGTCTCCCGGGAACTCGCCGGTGAGGTAGCTCGGGGGC
TCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCATACCACGGGCTGCCCGAGGACACCGGCTTGGCCTTAGCGGCGGTCTTGCGCATGGTGA
CGCGGGCCTCGCCGAAGAGGGCGGACGATGGCAGGTTCTTCACCGCCTTTCCGGCAAAGGCCGGGGAGGAGAGTGCCATGGCGGTGGTCGCCATTGCTCT
TACAGTTGATGTGTTGTGTGCTCTCCAAGAGTGAGGCGCTGGTGTGTGAGGAGAT