CANTATAdb - search

Detailed information on CNT30345522

BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-158

BLAST vs NONCODE:
NONBNAT007398, E-value = 2e-56

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30521860	Eragrostis tef	Setaria italica	54.28	48.08	88.5	539	forward
CNT30188246	Eragrostis tef	Secale cereale	46.73	43.81	94.4	464	forward
CNT30225179	Eragrostis tef	Hordeum vulgare	54.08	55.13	87.15	537	forward
CNT30443381	Eragrostis tef	Aegilops tauschii	54.08	55.48	90.5	537	forward
CNT30241578	Eragrostis tef	Avena sativa	53.88	50.71	90.65	535	forward
CNT30455809	Eragrostis tef	Saccharum spontaneum	54.38	49.59	93.52	540	forward
CNT30141287	Eragrostis tef	Lolium perenne	54.58	53.29	87.64	542	forward
CNT3011673	Eragrostis tef	Zea mays	42.7	54.43	95.28	424	forward
CNT30369260	Eragrostis tef	Oryza glumipatula	60.83	59.62	90.89	604	forward
CNT30149090	Eragrostis tef	Brachypodium distachyon	51.66	52.56	88.89	513	forward
CNT30103422	Eragrostis tef	Oryza rufipogon	54.28	41.56	93.32	539	forward
CNT30575045	Eragrostis tef	Oryza barthii	54.38	57.2	94.07	540	forward
CNT30579967	Eragrostis tef	Echinochloa crusgalli	47.43	46.22	94.69	471	forward
CNT30497363	Eragrostis tef	Digitaria exilis	54.38	45.88	91.3	540	forward
CNT30604592	Eragrostis tef	Oryza punctata	54.18	53.96	92.01	538	forward

Expression of CNT30345522

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MACTKKPNMENMARRPFLISFTLSSAKASGSSARPSGSKLPPG*

>peptide 2 (63 aa)
MSTNTHYWYNLPSACSILQYSYTHRYNSTYEYVRRLRYTRHPSFTLLLTCRGRSWWRRTMRCC*

Sequence

>CNT30345522
TGATAAATGGGTACCATGTGCAGAAAGATGTCATCTCTGTAAATAAAAATTTACAGCTCCATGCTTATTTAATTTATTGAGTCATTCATCAGGCCCATCC
AGAACATGAGCACAAATACACACTACTGGTACAATCTCCCATCGGCGTGCTCCATTTTACAGTACTCGTACACCCACAGGTACAATAGTACATACGAATA
CGTACGTCGACTACGGTACACACGACATCCCAGCTTCACCTTGCTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGACCATGCGTTGTTGTTGACGG
GGTCGGCGAGGTGGTCAGCGAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGCACAAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTT
CTTGATCTCCTTCACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCCAGCGGGTCGAAGCTGCCGCCTGGGTAGAGCGGGTCGACGACCTCG
CCGAGCGGGCCGCCGGCGACGCGGTATCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCG
GGTTGCCGAGGTAGTCCAGCCCGCCCTCGCTGAAGATCTGGGACCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCCAGCAGCTC
GGGGAAGACGCAGCCCAGCGCGCCCAGCATGGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTAGCTCGGGGGCTCG
CCGGAGAAGGGGCCCAGGTACTTGACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGC
GGGCCTCGCCGAAGGCGCCCACCTTGATGGGGGCAGCCATTGCTGATCGAGCGTGAGCTGATGAGAGAGTGTGCTAGCTAGCTGTGCGATGAG