CANTATAdb - search

Detailed information on CNT30117570

BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 9e-149

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696247	Oryza nivara	Oryza sativa	92.34	89.76	99.79	964	forward
CNT30641326	Oryza nivara	Nymphaea colorata	59.29	55.42	86.27	619	forward
CNT30555049	Oryza nivara	Oryza glaberrima	100	88.62	99.43	1044	forward
CNT30241578	Oryza nivara	Avena sativa	64.46	63.79	89.75	673	forward
CNT30131530	Oryza nivara	Lolium perenne	51.63	65.81	87.38	539	forward
CNT30363150	Oryza nivara	Sorghum bicolor	65.33	56.41	91.35	682	forward
CNT30369277	Oryza nivara	Oryza glumipatula	58.24	62.36	96.71	608	forward
CNT30497363	Oryza nivara	Digitaria exilis	63.6	56.41	89.31	664	forward
CNT30604592	Oryza nivara	Oryza punctata	54.31	56.87	93.47	567	forward
CNT3063784	Oryza nivara	Selaginella moellendorffii	51.82	47.17	87.25	541	forward

Expression of CNT30117570

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

>peptide 2 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

Sequence

>CNT30117570
AGTATTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAAAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAATCATT
ATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGAC
AACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGTCGGCGAG
GTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGC
TCCGCGAACGCCTCGGGGTCATCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCCGGCGATGC
GGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCC
GCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAACCGAGCGCG
CCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGC
CCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGC
CGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGC
TGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTT