CANTATAdb - search

Detailed information on CNT30696247

BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 2e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30521860	Oryza sativa	Setaria italica	49.72	47.64	88.01	534	forward
CNT30641326	Oryza sativa	Nymphaea colorata	57.64	55.42	86.43	619	forward
CNT30555049	Oryza sativa	Oryza glaberrima	90.5	82.51	99.59	972	forward
CNT30241578	Oryza sativa	Avena sativa	62.66	63.79	89.75	673	forward
CNT30141287	Oryza sativa	Lolium perenne	55.68	58.8	86.29	598	forward
CNT30363150	Oryza sativa	Sorghum bicolor	63.5	56.41	91.5	682	forward
CNT30596879	Oryza sativa	Oryza meridionalis	65.46	64.73	98.86	703	forward
CNT30369277	Oryza sativa	Oryza glumipatula	56.61	62.36	96.88	608	forward
CNT30582453	Oryza sativa	Echinochloa crusgalli	56.89	57.64	91.33	611	forward
CNT30117570	Oryza sativa	Oryza nivara	89.76	92.34	99.79	964	forward
CNT30604592	Oryza sativa	Oryza punctata	52.79	56.87	93.65	567	forward
CNT3063784	Oryza sativa	Selaginella moellendorffii	50.37	47.17	87.25	541	forward

Expression of CNT30696247

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

>peptide 2 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

>peptide 3 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

Sequence

>CNT30696247
ATCGAGGGAGTATTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACGAATA
AAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAAC
CCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGG
TCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCA
CCTTGAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCC
GGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAG
TCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGC
CGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCC
GTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGAC
GACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATCACCG
GGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCG