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Detailed information on CNT30604592


BLAST search results

BLAST vs Swiss-Prot:
sp|P06671|CB22_MAIZE, E-value = 1e-152

BLAST vs NONCODE:
NONBNAT007398, E-value = 2e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696247Oryza punctataOryza sativa56.8752.7993.65567forward
CNT30641326Oryza punctataNymphaea colorata56.8750.7685.89567forward
CNT30534453Oryza punctataEucalyptus grandis61.9954.8885.28618forward
CNT30188246Oryza punctataSecale cereale52.0649.0192.29519forward
CNT30285424Oryza punctataTriticum aestivum47.6466.7192.63475forward
CNT30225735Oryza punctataHordeum vulgare62.8978.0885.65627forward
CNT30383589Oryza punctataTriticum turgidum62.7982.2687.06626forward
CNT30555049Oryza punctataOryza glaberrima56.8748.1393.47567forward
CNT30443381Oryza punctataAegilops tauschii54.9656.6188.87548forward
CNT30241578Oryza punctataAvena sativa62.6959.2488.48625forward
CNT30668255Oryza punctataTriticum dicoccoides62.7963.7589.46626forward
CNT30455809Oryza punctataSaccharum spontaneum57.4752.6292.84573forward
CNT30141287Oryza punctataLolium perenne63.1961.9587.46630forward
CNT3011673Oryza punctataZea mays41.1252.6392.2410forward
CNT30345522Oryza punctataEragrostis tef53.9654.1892.01538forward
CNT30363150Oryza punctataSorghum bicolor56.8746.991.36567forward
CNT30596888Oryza punctataOryza meridionalis50.6546.3393.86505forward
CNT30369277Oryza punctataOryza glumipatula56.8758.1593.3567forward
CNT30103422Oryza punctataOryza rufipogon59.9846.1193.48598forward
CNT30575045Oryza punctataOryza barthii59.6863.0393.78595forward
CNT30497363Oryza punctataDigitaria exilis63.1953.5391.43630forward
CNT30117570Oryza punctataOryza nivara56.8754.3193.47567forward

Expression of CNT30604592

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSASPSGSKLPPG*

Sequence

>CNT30604592
CTACTATATTCAATGAATAATCGTGTTGTTTGGTGTTGATCGTTAAAAAAAAAAAGAATAACAGACAGATAACCAAGACCAATTGTTGGGAACGAATAAA
ATCATTATTGCAAAAGCATCATCTTCTTCTTAGTGTACAACACCAACTCGATCATCATCTCGATCTCCCAGCCCAAAGACAACGAACTCGCTGGCCCAAA
TCCATATCCAACCACAACCACAACACTGCTGCTACCTAGCTACGCTCCCTCACTTGCCGGGCACGAAGTTGGTGGCGTACGCCCACGCGTTGTTGTTCAC
CGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGTGGCCCCTTGCCGGTGACGATGGCCTGGACGAAGAACCCAAACATGGAGAACATGGCGAGGCGGCCA
TTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGCCCCAGCGGGTCGAAGCTGCCGCCTGGGTAGAGCGGGTCGACGACCT
CGCCGAGCGGGCCACCGGCGATGCGGTAACCCTCGACGGCGCCCATGAGCACCACCTGGCACGCCCAGATCGCCAGGATGCTCTGCGCGTGGATCAAGCT
CGGGTTGCCGAGGTAATCGAGGCCACCTTCGCTGAAGATCTGTGACCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGC
TCCGGGAAGACGCAGCCGAGCGCGCCGAGCATTGCCCAACGGCAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAACGTCTCGGGATCGGCGGAGAGCC
CCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGTGGCTCGCCGGAGAGCGGGCCGAGGTGGACGCCGCGCGGGCCATCACC
GGGGAGGAGAGCGCCATGGTGGCCATTGCTAGCCGCTGCTGCACTGAGCTTGATTGAGCTGAGAGAGACGGCCGAGTTCGCGTTGGTGATTGTGGTG