Detailed information on CNT30555049


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 5e-148

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696247Oryza glaberrimaOryza sativa82.5190.599.59972forward
CNT30521860Oryza glaberrimaSetaria italica45.3347.6488.2534forward
CNT30641326Oryza glaberrimaNymphaea colorata52.5555.4286.59619forward
CNT30443381Oryza glaberrimaAegilops tauschii41.4350.4188.52488forward
CNT30241578Oryza glaberrimaAvena sativa57.1363.7989.9673forward
CNT30141287Oryza glaberrimaLolium perenne50.7658.886.45598forward
CNT30363150Oryza glaberrimaSorghum bicolor57.8956.4191.64682forward
CNT30369277Oryza glaberrimaOryza glumipatula51.6162.3697.04608forward
CNT30577796Oryza glaberrimaOryza barthii42.0210099.6495forward
CNT30497363Oryza glaberrimaDigitaria exilis56.3756.4189.61664forward
CNT30117570Oryza glaberrimaOryza nivara84.395.1199.4993forward
CNT30604592Oryza glaberrimaOryza punctata48.1356.8793.47567forward
CNT3063784Oryza glaberrimaSelaginella moellendorffii45.9347.1787.25541forward

Expression of CNT30555049

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

>peptide 2 (44 aa)
YCIRKFKVLINPSMPQYKQFNYIFTLYIARNGYILGSREYLFLI*

>peptide 3 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

Sequence

>CNT30555049
CTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAATATAAACAATTTAACTACATATTTACACTATACATAGCCAGAAATGGTTAT
ATTTTGGGATCGAGGGAGTATTTGTTTCTGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGA
AACAAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCT
TCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTGCCCCACTTCACTTGCCGGGGACGAA
GTTGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAT
CTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGC
GGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGC
CGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAA
GACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTG
TCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGC
TCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGAGCGCCATGGTGGCCGCGGC
CATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTTGGGAGTTGGAGATGGCGC