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Detailed information on CNT30656613


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 3e-161

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690606Triticum dicoccoidesOryza sativa73.1574.0890.98643forward
CNT30554829Triticum dicoccoidesOryza glaberrima67.5849.7191.75594forward
CNT30241578Triticum dicoccoidesAvena sativa7663.3291.32668forward
CNT30470687Triticum dicoccoidesSaccharum spontaneum74.5282.1890.38655forward
CNT30345518Triticum dicoccoidesEragrostis tef63.3768.2693.54557forward
CNT30363150Triticum dicoccoidesSorghum bicolor66.6748.4791.47586forward
CNT30596879Triticum dicoccoidesOryza meridionalis74.8660.5992.4658forward
CNT30369301Triticum dicoccoidesOryza glumipatula58.9357.1791.12518forward
CNT30149365Triticum dicoccoidesBrachypodium distachyon66.7892.7388.93587forward
CNT30574765Triticum dicoccoidesOryza barthii73.1572.4990.67643forward
CNT30582834Triticum dicoccoidesEchinochloa crusgalli74.5268.3790.84655forward
CNT30497363Triticum dicoccoidesDigitaria exilis64.7348.3490.51569forward
CNT30117513Triticum dicoccoidesOryza nivara75.254.4590.02661forward

Expression of CNT30656613

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHRQWITSSSRFLAKVSGSAESPAVSHP*

>peptide 2 (55 aa)
MVTRASPKSADDGRSFTAFPAKEEGESAIAVVAIARWSRRLRACPMCVLSRSGAVV

>peptide 3 (80 aa)
ACMRTLDRVRTYVHGRFPDTTQHLAAYLPGTKLVAKAQALLLTGSARWSARRPFLISFTLSSANASGSSARPRGSKLPPG*

Sequence

>CNT30656613
ACGCATGCATGCGCACACTTGATCGCGTACGTACGTACGTGCACGGTCGGTTTCCAGACACAACACAACACCTAGCAGCTTACTTGCCGGGCACGAAGTT
GGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCG
GGGTCGTCAGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGATCTCGCCGAGCGGGCCGCCGGCGACGCGGTAGCCCTCGACGG
CGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGGACGAGGCTGGGGTTGCCAAGGTAGTCGAGGCCGCCCTCGCTGAAGAT
CTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTAACGCCGTTGCGGGCGAGCAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCAC
CGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCAGCCGAGAGCCCCGCGGTGTCCCATCCGTAGTCGCCGGGGAACTCACCGG
TGAGGTAGCTCGGGGGGTCGCCGGATAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCCCGACGACACCGGCTTGGCCTTGGCCGC
GGTCTTGCGCATGGTGACGCGCGCCTCCCCGAAGAGCGCCGACGACGGCAGGTCCTTCACCGCCTTCCCGGCGAAGGAGGAGGGGGAGAGCGCCATCGCG
GTGGTCGCCATTGCTCGCTGGTCGAGGAGACTTCGTGCGTGTCCAATGTGCGTGCTCTCTAGGAGTGGGGCTGTGGTGG