Detailed information on CNT30670785


BLAST search results

BLAST vs Swiss-Prot:
sp|P08440|ALF_MAIZE, E-value = 7e-32

BLAST vs NONCODE:
NONPOPT000956, E-value = 2e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021376Setaria viridisCitrullus lanatus65.4823.8183.03165forward
CNT30636709Setaria viridisCapsicum annuum69.0529.3982.18174forward
CNT30568685Setaria viridisActinidia chinensis67.4615.1784.12170forward
CNT30622084Setaria viridisCajanus cajan37.712.7983.1695forward
CNT30120586Setaria viridisCitrus clementina38.128.7484.3896forward
CNT3036222Setaria viridisCucumis melo26.5918.3185.0767forward
CNT30149185Setaria viridisBrachypodium distachyon37.725.4787.3795forward
CNT30113854Setaria viridisFicus carica65.4823.2783.64165forward

Expression of CNT30670785

Peptides detected in this lncRNA

>peptide 1 (35 aa)
VPRVASELALHLVRKAALAFSTFSTLPPHALRVLA*

Sequence

>CNT30670785
ACGTGCCGAGGGTGGCCTCTGAGTTGGCCTTGCACCTGGTGAGGAAGGCAGCCCTGGCCTTCTCCACATTCTCCACCTTGCCACCCCACGCCTTGAGGGT
GCTCGCCTGAAGGGCACGGCCAAAGGAGAAAGACAGGGACCACGGCTTCTTGGTGTTGAGCTTGTTCATTGCGTTGAGGACATCGACGAAGGGCTTGCCG
TCCTTGGTCTTCTGGTAGAGGGTCTCCTCAAAGAGGATCACGCCACTGAGGT