Detailed information on CNT3017229


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676412Zea maysSetaria viridis63.7879.4190.12162forward
CNT30378461Zea maysArabidopsis thaliana68.1111.1684.39173forward
CNT30538058Zea maysBrassica napus62.621.5283.65159forward
CNT30234830Zea maysBrassica oleracea62.616.2284.28159forward
CNT30312704Zea maysCamelina sativa25.9810.8986.3666forward
CNT3061541Zea maysArabidopsis lyrata53.9418.8785.4137forward
CNT3078686Zea maysBrassica juncea62.634.3484.91159forward
CNT30259795Zea maysBrassica rapa62.618.9183.65159forward
CNT30479003Zea maysArabidopsis halleri53.9432.5485.4137forward
CNT30366386Zea maysSorghum bicolor72.4426.8295.65184forward
CNT30108236Zea maysOryza longistaminata83.0724.4282.94211forward
CNT30151711Zea maysBrachypodium distachyon67.7244.187.79172forward
CNT30114546Zea maysEutrema salsugineum64.1722.5182.82163forward

Expression of CNT3017229

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSSSVRRLMKTGFPRHFTVTVVPGSMLERSTSSEARASTSLLADML

>peptide 2 (71 aa)
QPPKSPALGSGMQPRVLHTLCILLWVAQGCHIHTVGKLDVILCPTPDEDWLSTPLHGHCGPWLDAGEVHLK*

Sequence

>CNT3017229
CAGCCGCCAAAGTCTCCGGCATTAGGTAGTGGGATGCAGCCGAGGGTTCTTCACACGCTCTGCATCCTGCTCTGGGTGGCGCAGGGATGCCACATCCACA
CTGTTGGCAAGCTTGATGTCATCCTCTGTCCGACGCCTGATGAAGACTGGCTTTCCACGCCACTTCACGGTCACTGTGGTCCCTGGCTCGATGCTGGAGA
GGTCCACCTCAAGTGAAGCAAGGGCAAGCACATCCTTGCTTGCTGACATGCTCA