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Detailed information on CNT30234830


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LYR2|UCRI2_ARATH, E-value = 7e-170

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3061541Brassica oleraceaArabidopsis lyrata39.5953.4488.14388forward
CNT3017229Brassica oleraceaZea mays16.2262.684.28159forward
CNT30366386Brassica oleraceaSorghum bicolor16.4323.4780.12161forward

Expression of CNT30234830

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSGEGEGGRIRRSLRNREKPPPCYSQHLCSQGVMAE*

>peptide 2 (31 aa)
MRTVTRAKPAAVVTSIRQGDAPQVSADSNHH*

>peptide 3 (59 aa)
MSSSVLLLMKTGFPRHLTVTVVPGSMLPRSTSREARARTSLLADMLTMSLRTRRRRTEA*

Sequence

>CNT30234830
AGAAACAGACAGACTGTTGTTTTTTTATTCGTCATTAACCAATGAGTAACTTGTTTTCTTCCAAGAAGCTGTAGGTTGGTACCTCCAGGTTATACGGCGC
AGGACCTTTCCTAATCCTTCCAGAGATGTCGTAATGCGAACCGTGACAAGGGCAAAACCAGCCGCCGTAGTCACCAGCATTAGGCAAGGGGATGCACCCC
AGGTGAGTGCAGACTCCAACCACCACTAACCATTCCGGATTCTTGACCCTGACGGCATCTTCTTGCGGGTCTCTCAGAGAACCGAGATCCACACTATTGG
CCAGCTTGATGTCATCTTCTGTTCTTCTCCTGATGAAGACAGGCTTTCCACGCCACTTAACCGTCACAGTAGTTCCTGGCTCGATGCTCCCTAGGTCGAC
CTCGAGGGAAGCAAGGGCGAGGACGTCCTTACTTGCGGACATGCTGACAATGAGCTTGAGAACAAGAAGGCGGAGAACAGAGGCGTAAACAAACCTCCCA
CCGGAAAGGACGAAATAGGCGAAGGCACGCTTGCTAGGGTCACCAGGTGGGTAACGCTCATGGTTATGGTCGTCATAGACGATCTTTGAGTTAGGTGTCT
TGACCGCCTCCACGGTGGCGGGTTCCGAACCAAAACCTACCTCGTTCCCTTGAGGGGGCAGACCTCTTACAAGGTGGTAAGAACCGAAACGAGAAAGGTC
AGGTGAGGGGACAGATCTGGTGGCGGAAGAGGAGGAGTCGCCGCCGCCTTCGGAGAGGGTATGGTCTCGGGAGAGGGCGAAGGAGGTCGCATTCGTAGAT
CTCTGCGAAACAGAGAAAAGCCTCCTCCCTGCTACTCGCAGCATCTCTGCTCTCAGGGTGTAATGGCCGAATAGCGAGAACAGGCTCCAAAGGCTATGGA
CAAGGCCGATGCAACGGGGGAGATGAGTTCCGTAAAATTAGTCTTTCATGGAAGAAAAGGTCAGCTTGATTTTACTATAT