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Detailed information on CNT30479003


BLAST search results

BLAST vs Swiss-Prot:
sp|P49729|UCRI1_TOBAC, E-value = 1e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690990Arabidopsis halleriOryza sativa27.0833.6382.46114forward
CNT30676412Arabidopsis halleriSetaria viridis23.9949.5187.13101forward
CNT30378397Arabidopsis halleriArabidopsis thaliana10049.4196.91421forward
CNT30538058Arabidopsis halleriBrassica napus92.452.6488.17389forward
CNT30235076Arabidopsis halleriBrassica oleracea92.448.3888.17389forward
CNT30312704Arabidopsis halleriCamelina sativa73.6351.1695.16310forward
CNT3061541Arabidopsis halleriArabidopsis lyrata95.9655.6597.52404forward
CNT3082916Arabidopsis halleriBrassica juncea92.6480.9189.74390forward
CNT30259795Arabidopsis halleriBrassica rapa95.0147.5690.5400forward
CNT3017229Arabidopsis halleriZea mays32.5453.9485.4137forward
CNT30366386Arabidopsis halleriSorghum bicolor31.3519.2481.82132forward
CNT30151711Arabidopsis halleriBrachypodium distachyon34.236.9286.11144forward
CNT30114546Arabidopsis halleriEutrema salsugineum97.8656.9190.53412forward

Expression of CNT30479003

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSSSVLRLMKTGFPRHLTVTVVPGSMLPRSTSRDARART

Sequence

>CNT30479003
CCCAGACTCTGACTGTTGTGCTTTTATTAATCAACCAATGAGTAACTTATTCTCTTCCAGGAAGCTGTAGGTTGGTACTTCCAGGTTGTATGGTGCAGGA
CCTTTCCTAATTCTTCCAGAGATATCATAATGTGATCCGTGACAAGGACAAAACCAACCACCATAATCACCAGCATTAGGCAAGGGGATGCACCCCAAAT
GAGTGCATACTCCAACCACGATTAACCATTCAGGATTCTTGACTCTAACCGAGTCTTCTTGTGGGTCCCTCAAGGATCCAACATCCACACTATTGGCCAG
CTTGATGTCATCTTCTGTTCTTCGCCTGATGAAGACTGGCTTTCCTCGCCACTTGACTGTCACGGTAGTTCCTGGTTCGATGCTCCCTAGGTCAACCTCA
AGGGATGCAAGGGCAAGGACA