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Detailed information on CNT30378461


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LYR2|UCRI2_ARATH, E-value = 4e-116

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30539020Arabidopsis thalianaBrassica napus31.8775.5489.07494forward
CNT3017229Arabidopsis thalianaZea mays11.1668.1184.39173forward
CNT30366386Arabidopsis thalianaSorghum bicolor9.3521.1480.69145forward
CNT30151711Arabidopsis thalianaBrachypodium distachyon11.144.185.47172forward

Expression of CNT30378461

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MISAKQKKASFLLLAASLLKWVKTDSRVSLKARTHNRKVRDGRCKQ

>peptide 2 (54 aa)
MNKLHVKIDYLIKKGLSQSWSIHIRSITIPARRRMRRNGTSSSNTHHKNSKQMT*

>peptide 3 (59 aa)
MSSSVLRLMKTGFPRHLTVTVVPGSMLPRSTSRDARARTSLLADMLTISFKTSRRRTEA*

>peptide 4 (30 aa)
MSKSIISSKKDYLKAGQFISDQSLFQQGEE*

Sequence

>CNT30378461
ATAATCACCAGCATTAGGCAAGGGGATGCACCCCAAATGAGTGCACACTCCAACAACCACTAACCATTCTGGATTCTTGACCCTAACCGAGTCTTCTTGT
GGGTCCCTCAGGGATCCAACATCCACACTATTGGCCAGCTTGATGTCATCTTCTGTTCTTCGCCTGATGAAGACGGGCTTTCCACGCCACTTGACTGTCA
CGGTAGTTCCTGGTTCTATGCTCCCTAGGTCAACCTCAAGGGATGCAAGGGCAAGGACATCTTTACTTGCAGACATGCTCACAATAAGCTTCAAAACAAG
CAGGCGGAGGACAGAGGCATAAACAAACCTCCCACCCGACAAGACAAAATAGGCGAATGCACGCTTGCTAGGGTCACCAGGTGGGTAACGCTCATGGTTA
TGGTCGTCATAGACAATCTTTGAGTTAGGTGTTTTGACAGCTTCGACTGTGGCTGGGACTTCCGAACCAAAACCTATCTCATTTCCCTGAGTAATGACTT
GAGAAGCAAAACCTGAAAATAGCATGAAACATTAATATTTCACATCAAGGGCAAACTTTATACTTGGTCAAGTGTTCAACAACACCAAGTATTAAGCAAA
AATATTTTCAAGAGATAACACAGAAGAAAGGAATAACACTAGCAAACATTTAACATTAATGCATAGAATAACATAAGATTATAAAAACGGATTCCAAGAG
ATAACAGAAGGTGTCATCCAAACAATTTTCTACCATGATATCAAATTCAGTGAAAACTAAACTAATCTATCTAACGCAAGATCCAAGGAAGGAACTTCAA
TGATCATAAATGCTTAAAACATAAGAAAACTCCTAAGATAAGATTGCAAACATAGCCCTTTTGGTTAAAGATATGGAATTCCAGATTCGTTTACTGATGC
AAGTATCTTATATGATGTGCCCAAAGACGATAAAACATCCATTTCCATAATAATGAATAAACTACATGTCAAAATCGATTATCTCATCAAAAAAGGATTA
TCTCAAAGCTGGTCAATTCATATCCGATCAATCACTATTCCAGCAAGGAGAAGAATGAGACGAAATGGTACATCAAGCTCTAATACACATCATAAGAATT
CAAAACAGATGACTTAATTCCCATAGATCATCTCGCAGATACGAAACTAGGAATCTCAATCATTTCCGGACTTATACAAGCCCAAAAGAGGTGACTTTTA
AAAATTTATGAATCATTCAATGGATAACACCAGAAATGAAAATCAATCGAGAGACAGAAAGAGTTGTAGATCGGCAGACCTCTTATAACGCTCCGGTGGT
AAGAATTGAAAGATGAGAGATCTGCAGAGGGGACAGATCTAGAAGCGGAAGAGGAGTTGCCTCCATCGGAAAGGGTATGGTCACGGGAAAGGACGAAGGA
GGTCGCCGTCGATGATCTCTGCGAAACAGAAAAAAGCCTCCTTCCTGCTACTCGCAGCATCTCTGCTCAAATGGGTTAAGACCGATTCTAGGGTTTCGCT
CAAAGCAAGAACACACAATCGTAAGGTTAGAGATGGCCGATGCAAACAAA