Detailed information on CNT30676412


BLAST search results

BLAST vs Swiss-Prot:
sp|P49727|UCRI_MAIZE, E-value = 5e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378397Setaria viridisArabidopsis thaliana49.5111.8586.14101forward
CNT30538058Setaria viridisBrassica napus49.5113.6784.16101forward
CNT30233867Setaria viridisBrassica oleracea43.6323.4288.7689forward
CNT3061541Setaria viridisArabidopsis lyrata49.5113.9187.13101forward
CNT3078686Setaria viridisBrassica juncea49.5121.8187.13101forward
CNT30259795Setaria viridisBrassica rapa49.5112.0184.16101forward
CNT3017229Setaria viridisZea mays79.4163.7890.12162forward
CNT30479003Setaria viridisArabidopsis halleri49.5123.9987.13101forward
CNT30366386Setaria viridisSorghum bicolor87.7526.0991.06179forward
CNT30370159Setaria viridisOryza glumipatula23.0415.9393.6247forward
CNT30108236Setaria viridisOryza longistaminata86.2720.3782.39176forward
CNT30151711Setaria viridisBrachypodium distachyon50.9826.6790.38104forward
CNT30114546Setaria viridisEutrema salsugineum36.2710.2286.4974forward

Expression of CNT30676412

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MTTSHSGFFTRSASCCGSRSDATSTLLASLMSSSVRRLMKTGFPRHFTVTVVPGSMLERSARPASWF

Sequence

>CNT30676412
CGATGACCACCAGCCACTCAGGGTTCTTCACACGCTCCGCGTCCTGCTGTGGGTCACGCAGTGACGCGACGTCCACACTGTTGGCCAGCTTGATGTCATC
CTCAGTCCGGCGCCTGATGAAGACTGGCTTCCCACGCCACTTCACAGTCACTGTGGTGCCTGGTTCGATGCTGGAGAGGTCAGCCAGGCCAGCATCTTGG
TTCC