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Detailed information on CNT3061541


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LYR2|UCRI2_ARATH, E-value = 2e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676412Arabidopsis lyrataSetaria viridis13.9149.5187.13101forward
CNT30378397Arabidopsis lyrataArabidopsis thaliana84.1671.7191.98611forward
CNT30628555Arabidopsis lyrataVigna unguiculata11.0222.9286.2580forward
CNT30538058Arabidopsis lyrataBrassica napus53.4452.587.89388forward
CNT30234830Arabidopsis lyrataBrassica oleracea53.4439.5988.14388forward
CNT30312704Arabidopsis lyrataCamelina sativa42.751.1695.16310forward
CNT3082916Arabidopsis lyrataBrassica juncea53.7280.9189.74390forward
CNT30259795Arabidopsis lyrataBrassica rapa54.9647.4489.97399forward
CNT3017229Arabidopsis lyrataZea mays18.8753.9485.4137forward
CNT30479003Arabidopsis lyrataArabidopsis halleri55.6595.9697.52404forward
CNT30151711Arabidopsis lyrataBrachypodium distachyon19.8336.9287.5144forward
CNT30114546Arabidopsis lyrataEutrema salsugineum55.2355.3990.27401forward

Expression of CNT3061541

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRTVTRTKPTAIITSIRQGDAPQMSAYSNHN*

>peptide 2 (46 aa)
MDKRRSSIRSTKITSCIIQQKQDNLALTCPKILIKKKKKEPSQDHH*

>peptide 3 (30 aa)
MSNLFSSRKLYVGTSRLYGAGPFLILPEIS*

>peptide 4 (40 aa)
MNRVFHQRWINEDRVYVQQKSQVVLFSKNKTILLLHARKY*

>peptide 5 (37 aa)
MSSSVLRLMKTGFPRHLTVTVVPGSMLPRSTSRDARAR

Sequence

>CNT3061541
CTTTGTTGTATGAATTTAAGTGAACATTGAGACAATATTATTGGGTAGATGCAATTTTTAATTGGTGAAGACGCCTAGAATCTTGAGATGCGAAAGAAAT
CTATCTCATACATAGAACAAATAGGCATGTTAAACAATAAACACAGACTATGAACAGAGTCTTTCACCAGCGATGGATAAACGAAGATCGAGTATACGTT
CAACAAAAATCACAAGTTGTATTATTCAGCAAAAACAAGACAATCTTGCTCTTACATGCCCGAAAATATTAATTAAAAAAAAAAAAAAAGAACCAAGTCA
AGATCATCATTGAGACCCAGACTGTGCTTTTATTAATCAACCAATGAGTAACTTATTCTCTTCCAGGAAGCTGTATGTTGGTACTTCCAGGTTGTATGGT
GCAGGACCTTTCCTAATTCTTCCGGAGATATCATAATGCGAACCGTGACACGGACAAAACCAACCGCCATAATCACCAGCATTAGGCAAGGGGATGCACC
CCAAATGAGTGCATACTCCAACCACAATTAACCATTCTGGATTCTTGACTCTAACCGAGTCTTCTTGTGGGTCCCTCAAGGATCCAACATCCACACTATT
GGCCAGCTTAATGTCATCTTCTGTTCTTCGCCTGATGAAGACTGGCTTTCCACGCCACTTGACTGTCACGGTAGTTCCTGGTTCGATGCTCCCTAGGTCA
ACCTCAAGGGATGCAAGGGCAAGGAC