Detailed information on CNT30538058


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94JS0|UCRI1_ARATH, E-value = 9e-122

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676412Brassica napusSetaria viridis13.6749.5184.16101forward
CNT30378397Brassica napusArabidopsis thaliana69.1559.9888.45511forward
CNT30235076Brassica napusBrassica oleracea90.883.4699.55671forward
CNT30312704Brassica napusCamelina sativa41.1450.1788.82304forward
CNT3061541Brassica napusArabidopsis lyrata52.553.4487.89388forward
CNT3080912Brassica napusBrassica juncea70.562.0292.51521forward
CNT3017229Brassica napusZea mays21.5262.683.65159forward
CNT30479003Brassica napusArabidopsis halleri52.6492.488.17389forward
CNT30108236Brassica napusOryza longistaminata22.1918.9880.49164forward
CNT30151711Brassica napusBrachypodium distachyon21.114083.97156forward
CNT30114546Brassica napusEutrema salsugineum69.1570.5889.04511forward

Expression of CNT30538058

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MSSSVLLLMKTGLPRHFTVTVVPGSMLPRSTSREARARTSLLADMLTISFRTRRRRTEA*

>peptide 2 (49 aa)
IRTDTIEQSFTIIIEKQNIMEKQNMSTRSINTTKFLIIQQKKKNETILL*

>peptide 3 (31 aa)
MRTMTRTKPTTVVTSIRQRDASQVSADSNHD*

Sequence

>CNT30538058
CAATAAGAACAGACACTATTGAACAGTCTTTCACCATCATCATTGAAAAACAGAACATCATGGAAAAACAGAACATGAGTACACGTTCAATAAATACGAC
AAAGTTTCTTATTATTCAGCAAAAAAAAAAAAACGAGACAATCTTGCTCTAAATTGCCTGAATATTAAAAAAAAAATAGAAGAGAATCTTTGAGAAACAG
ACAGACTGTTGTTTTTTTATTCGTCATTAACCAATGAGTAACTTGTTTTCTTCCAAGAAGCTGTAGGTTGGTACCTCCAGGTTATACGGCGCAGGACCTT
TCCTAATCCTTCCAGAGATATCATAATGCGAACCATGACACGGACAAAACCAACCACCGTAGTCACCAGCATTCGGCAACGGGATGCATCCCAAGTGAGT
GCAGACTCCAACCACGACTAGCCACTCCGGATTCTTAACTCTAACCGCATCTTCTTGCGGGTCTCTCAGAGAACCAAGATCCACGCTATTGGCAAGCTTG
ATGTCATCTTCTGTTCTTCTCCTGATGAAGACGGGCTTACCACGCCACTTCACAGTAACCGTAGTTCCCGGTTCGATGCTCCCGAGGTCAACCTCGAGGG
AAGCAAGGGCAAGGACATCTTTACTTGCGGACATGCTGACTATAAGCTTCAGAACAAGAAGGCGGAGAACAGAGGCGTAGACAAACCTCCCACCTGAGAG
GACGAAATAGGCGAATGCACGCTTGCTAGGGTCACCAGG