CANTATAdb - search

Detailed information on CNT30259795

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LYR2|UCRI2_ARATH, E-value = 8e-153

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30676412	Brassica rapa	Setaria viridis	12.01	49.51	84.16	101	forward
CNT30312704	Brassica rapa	Camelina sativa	36.15	50.17	90.13	304	forward
CNT3061541	Brassica rapa	Arabidopsis lyrata	46.49	53.86	90.03	391	forward
CNT3017229	Brassica rapa	Zea mays	18.91	62.6	83.65	159	forward
CNT30479003	Brassica rapa	Arabidopsis halleri	46.61	93.11	90.56	392	forward
CNT30355976	Brassica rapa	Lactuca sativa	20.81	40.6	81.71	175	forward
CNT30151711	Brassica rapa	Brachypodium distachyon	18.55	40	83.33	156	forward

Expression of CNT30259795

Peptides detected in this lncRNA

>peptide 1 (43 aa)
VISNKDKTMNSLFHHYRKTKLEYTLNKYGKGLIIQQKNKTILL*

>peptide 2 (31 aa)
MRSVTRAKPTTVVTSIRQRDAPQVSADSNHH*

>peptide 3 (59 aa)
MSSSVLLLMNTGFPRHFTVTVVPGSMLPRSTSRDARARTSLLADMLTMRLRTRRRRTEA*

Sequence

>CNT30259795
GTGATAAGCAATAAAGACAAGACTATGAACAGTCTCTTTCATCATTATCGAAAAACAAAGCTCGAGTACACGCTCAATAAATATGGCAAAGGTTTGATTA
TTCAGCAAAAAAACAAGACAATCTTGCTCTAACATTGCTGGAACATAGAAAAAAAAAGAAGACAAAGATGAAGTTCGCTGACTGTTGTGGTTTTTTTTTA
TTCATCAACCAATGAGTAACTTGTTCTCTTCCAGGAAGCTGTAGGTTGGTACCTCCAGGTTATACGGTGCAGGACCTTTCCTAATCCTTCCAGAGATATC
GTAATGCGATCCGTGACACGGGCAAAACCAACCACCGTAGTCACCAGCATTAGGCAACGGGATGCACCCCAAGTGAGTGCAGACTCCAACCACCACTAAC
CATTCCGGATTCTTGACTCTAACCGAGTCCTCTTGCGGGTCCCTCAAAGATCCAAGATCCACGCTGTTAGCCAGCTTGATGTCGTCCTCTGTTCTTCTCC
TGATGAACACTGGCTTTCCACGCCACTTCACTGTCACAGTAGTTCCAGGCTCGATGCTACCGAGGTCGACCTCGAGGGATGCAAGGGCAAGGACATCTTT
ACTCGCGGACATGCTGACAATGAGATTAAGGACAAGAAGGCGGAGAACAGAGGCGTAGACAAACCTCCCACCAGACAGGACGAAATAGGCGAAGGCACGC
TTGCTAGGGTCACCAGGCGGGTAACGCTCATGGTTGTGGTCATCATACACAATCTTTGAGTTAGGTGTCTTGACAGCCTCAACGGTGGCTGGGACTTCAG
AAGCAAAACCTATCTCGTTTCCTTGAGTAATGACTTGAGAA