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Detailed information on CNT30312704


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378397Camelina sativaArabidopsis thaliana51.1636.3894.84310forward
CNT30538058Camelina sativaBrassica napus50.1741.1488.82304forward
CNT30235076Camelina sativaBrassica oleracea50.1737.8188.82304forward
CNT3061541Camelina sativaArabidopsis lyrata51.1642.795.16310forward
CNT3082916Camelina sativaBrassica juncea50.9964.1189.97309forward
CNT30259795Camelina sativaBrassica rapa50.1736.1590.13304forward
CNT3017229Camelina sativaZea mays10.8925.9886.3666forward
CNT30479003Camelina sativaArabidopsis halleri51.1673.6395.16310forward
CNT30108236Camelina sativaOryza longistaminata21.1214.8181.25128forward
CNT30114546Camelina sativaEutrema salsugineum59.2449.5989.69359forward

Expression of CNT30312704

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MVQDLSEFFQRYHNGNRDTDKTNRRNHQH*

Sequence

>CNT30312704
TGGAACTCAAAACGTAATTGCAAACCCAAATTGATGATGACGCCAAGAATCTTGAGATACGTTAAAGGAATCTCTCTCATACAATAAACACAGACTAATG
AACATAGTCTTTCACGAGCAATAAATAATCGAAGCTTGGGTAACGTTCAACAAATATCACAAGTTTGTATTATTCGGCGAAAAAGCAAGACAAATCTTGC
TTTCAAAATGTCGGATTCCGGAATATAATAAAAACAAAACAAAAAAACAGATGAAGTTCATTGAGACCCAGACACTGACTGACTGACGTGATTTATTTAA
TCAACCAATGAGTAACTTATTCTCTTCCAGGAAGCTGTAGGTAGGTACTTCCAGGTTGTATGGTGCAGGACCTTTCCGAATTCTTCCAGAGATATCATAA
TGGGAACCGTGACACGGACAAAACCAACCGCCGTAATCACCAGCATTAGGCAAGGGGATACACCCTAAGTGAGTGCAGACTCCAACCACGATTAACCATT
CTGGATTCTTGACCCTAACCGAGTCTTCTTGTGGGTCCCTCAGGGATCCAACATCCACGCTATTGGCCAGCTTGATGTCATCTTCTGTTCTTCGCCTGAT
GAAGAC