Detailed information on CNT3078686


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94JS0|UCRI1_ARATH, E-value = 2e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676412Brassica junceaSetaria viridis21.8149.5187.13101forward
CNT3017229Brassica junceaZea mays34.3462.684.91159forward
CNT30366386Brassica junceaSorghum bicolor28.5119.2481.06132forward
CNT30108236Brassica junceaOryza longistaminata34.3418.481.76159forward
CNT30151711Brassica junceaBrachypodium distachyon33.694083.33156forward

Expression of CNT3078686

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MSSSVRLLMNTGLPRHLTVTVVPGSMLPRSTSREARASTSLLADMLTISFRTRRRRTEA*

Sequence

>CNT3078686
GTTGGTACTTCCAGGTTGTACGGTGCTGGACCTTTCCTGATCCTTCCAGATATATCGTAATGTGATCCGTGACACGGGCAAAACCAGCCTCCATAATCAC
CCGCATTAGGCAAAGGGATGCATCCCAAGTGAGTGCAGACTCCAACCACCACTAACCATTCCGGATTCTTCACCCTAACCGCATCTTCTTGTGGGTCTCT
CAGAGATCCGAGATCCACACTATTGGCCAGCTTGATGTCATCCTCTGTCCGTCTCCTGATGAACACGGGCTTGCCACGCCACTTGACTGTCACAGTAGTT
CCCGGTTCGATGCTACCGAGGTCAACCTCGAGGGAAGCAAGGGCAAGTACATCTTTACTTGCGGACATGCTGACAATAAGCTTCAGAACAAGAAGGCGGA
GAACAGAGGCATAAACAAACCTCCCACCGGAAAGGACGAAATAGGCGAAGGCACGCTTGCTAG