Detailed information on CNT30366386


BLAST search results

BLAST vs Swiss-Prot:
sp|P49727|UCRI_MAIZE, E-value = 6e-120

BLAST vs NONCODE:
NONBNAT000179, E-value = 2e-09

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690990Sorghum bicolorOryza sativa19.6839.8282.22135forward
CNT30676412Sorghum bicolorSetaria viridis26.0987.7591.06179forward
CNT30378461Sorghum bicolorArabidopsis thaliana21.149.3580.69145forward
CNT30539022Sorghum bicolorBrassica napus14.7220.6584.16101forward
CNT30234830Sorghum bicolorBrassica oleracea23.4716.4380.12161forward
CNT30658121Sorghum bicolorTriticum dicoccoides9.1829.7293.6563forward
CNT3078686Sorghum bicolorBrassica juncea19.2428.5181.06132forward
CNT3017229Sorghum bicolorZea mays26.8272.4495.65184forward
CNT30479003Sorghum bicolorArabidopsis halleri19.2431.3581.82132forward
CNT30370159Sorghum bicolorOryza glumipatula12.5429.1589.5386forward
CNT30108236Sorghum bicolorOryza longistaminata54.0842.9483.56371forward
CNT30151711Sorghum bicolorBrachypodium distachyon20.9936.9286.11144forward

Expression of CNT30366386

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVILIINHLRVRILHSSHSCWKASILVPWDKCFS*

>peptide 2 (83 aa)
MTTSHSGFFTRSASCSGWRRDATSTLLASLMSSSVRRLMKTGFPRHFTVTVVPGSMLERSTSSEARARLLGSPGGYLSWLYSS*

Sequence

>CNT30366386
TGCACTTTGGCAGATAACAGTCGACCATCAAGGCATGGCAATGATCCTCGTGATGCAAAAAAATTTTTAGCCAAACCATAAAAAGAAGGAACAATATAAC
AGCACAGCAGGGGTTCACCTGAGTGAAGTAGATAAATAGACAGGTGGTTTTCCAGATCTTAGCCTATGAGCAGTTTGTTCTCCTCCAAGAAACTGTAGGT
CGGGACCTCGAGGTTGAACGGCGCAGGGCCCTTGCGGATCCTCCCGGAAATGTCATAGTGGGAACCGTGGCATGGGCAGAACCAGCCACCGAAGTCTCCT
GCGTTCGGCAGTGGGATGCAGCCGAGGTGAGTGCACACGCCAATGACCACCAGCCACTCAGGGTTCTTCACACGCTCTGCGTCCTGCTCTGGGTGGCGCA
GGGATGCCACGTCCACACTGTTGGCAAGCTTGATGTCGTCCTCCGTCCGGCGTCTGATGAAGACTGGTTTTCCACGCCACTTCACGGTCACTGTGGTCCC
TGGCTCGATGCTGGAGAGGTCCACCTCAAGTGAGGCAAGGGCACGCTTGCTGGGATCTCCAGGAGGATATCTTTCATGGTTATACTCATCATAAACCACC
TTAGGGTTAGGATTCTTCACAGCAGCCACAGTTGCTGGAAAGCCAGCATCTTGGTTCCTTGGGACAAGTGTTTCAGTTGAAGAGAA