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Detailed information on CNT30671892


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 3e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520579Setaria viridisSetaria italica95.7242.25100447forward
CNT30243592Setaria viridisAvena sativa73.2344.2488.3342forward
CNT30656512Setaria viridisTriticum dicoccoides37.932.990.96177forward
CNT30451394Setaria viridisSaccharum spontaneum51.6128.3297.1241forward
CNT30132148Setaria viridisLolium perenne36.6219.1192.4171forward
CNT3013298Setaria viridisZea mays73.6639.8697.38344forward
CNT30362471Setaria viridisSorghum bicolor46.2548.8797.22216forward
CNT30370794Setaria viridisOryza glumipatula45.6129.7994.84213forward
CNT3035078Setaria viridisCucumis melo54.626.7385.49255forward
CNT30148203Setaria viridisBrachypodium distachyon72.3857.2987.57338forward
CNT30581304Setaria viridisEchinochloa crusgalli65.7432.8396.42307forward
CNT30496441Setaria viridisDigitaria exilis83.7348.0992.33391forward
CNT30556551Setaria viridisPanicum hallii49.0438.8197.38229forward

Expression of CNT30671892

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MACTKNPNMENMARRPFLISLTLSSAKVTGSSARPSGSKYWPPG*

>peptide 2 (37 aa)
MRKPSTRPMRMTWKPSTARMLCACTRLGLPRYLTRSGP

>peptide 3 (35 aa)
MVAGTKQPSSFLRPGRCLRRGRRGGRAGSRGAPCR*

>peptide 4 (35 aa)
CTFLNPENKVFALIGGTKVTSSLQWWQARSSRLAS*

Sequence

>CNT30671892
TGCACATTCCTGAATCCTGAGAACAAGGTATTTGCATTAATTGGTGGTACAAAAGTAACGAGTAGTCTACAATGGTGGCAGGCACGAAGCAGCCGTCTAG
CTTCTTAAGACCCGGGCGTTGTTTGCGACGGGGTCGTCGAGGTGGTCGAGCAGGTTCTCGAGGGGCCCCTTGCCGGTGACGATGGCCTGCACGAAGAATC
CGAACATGGAGAACATGGCGAGGCGTCCGTTCTTGATCTCCTTGACCTTGAGCTCGGCGAAGGTGACGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGTA
CTGGCCGCCCGGGTAGAGGTTGTTGCCCTCGCCGACGCCGTCGAGGCCGTTGATGCGGAAGCCCTCGACGAGGCCCATGAGGATGACCTGGAAGCCCAGC
ACGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTACTTGACGCGGTCCGGGCCGT