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Detailed information on CNT30728130


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 2e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698380Corchorus capsularisQuercus lobata19.5528.8691.23114forward
CNT30126429Corchorus capsularisCorymbia citriodora19.922.781.03116forward
CNT30113624Corchorus capsularisFicus carica21.6116.0985.71126forward

Expression of CNT30728130

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MDSMLEKSNLLCPSLPLVSSMIDKIQQVQELCELYHHCQPL*

Sequence

>CNT30728130
CATGTTGCTCCTAGCATCTGATGGATTCGATGCTGGAGAAATCAAACTTGTTGTGTCCTTCTTTGCCTCTCGTTTCATCAATGATTGATAAAATTCAACA
AGTTCAGGAGCTCTGTGAACTTTATCACCACTGCCAGCCCCTCTAGGTAGGCTTCCTGGAGGAGGAGGTGGTGGAGGGGCACCGGGTATTGGAGGCGGAG
CTGGAGGTTTTCCAGTTGTAGCGGTATTAGCACCAGCAGAGTTGCCACTTGCTGGCTTAGGTGGTGGCCTAGGCACCCTAGGTGGTCTCTTTTCAATGTG
TGCGAGTTTCATCTTGCTTATCATTTGAGAATCTACAGCCTTATCATCGCCGGATTGCTCACTTGAGTCACCAGGATTAACCGTCCTTTCCTTTATTTGA
GCAAGTCTTGGTGGTAACATTACAGATTTCTCTCTGTCTGCCTTTGTTCTGGACTCAAAGTTAGAATTGAAATTTGACTTGTCGCCAAACCTCTCTGCCC
TTGCTTGCTCTGCTCTTTTTTTAATATGTTTCTCCCTCTCCATGGCCAACTTGTGGCGGTCTTTATAAGCAGGATATTTTTCC