Detailed information on CNT30542653


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547713Brassica napusIpomoea triloba20.29.2193.6779forward
CNT30487554Brassica napusOlea europaea20.213.3292.4179forward
CNT30712442Brassica napusGlycine max20.464.7793.7580forward
CNT3075181Brassica napusBrassica juncea78.5284.1195.44307forward
CNT30261820Brassica napusBrassica rapa61.3876.6899.58240forward
CNT30599339Brassica napusFraxinus excelsior20.4614.2992.580forward
CNT30620761Brassica napusCajanus cajan20.4610.9792.580forward
CNT30642554Brassica napusCannabis sativa20.213.6991.1479forward
CNT30120214Brassica napusCitrus clementina20.4615.599580forward
CNT3038228Brassica napusCucumis melo20.4613.4991.2580forward
CNT30112246Brassica napusFicus carica20.7214.5293.8381forward
CNT30723951Brassica napusLupinus angustifolius21.7413.5492.9485forward
CNT3050069Brassica napusCucumis sativus20.4612.3891.2580forward

Expression of CNT30542653

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MFFLLLDLIDSMFQSELCFYYMNGFSISTICLLLVFNG

>peptide 2 (29 aa)
RDSRASLVIKVQLSTTLKVSLASPPLFSI*

Sequence

>CNT30542653
CGAGATTCTAGGGCTTCGCTGGTTATAAAGGTGCAACTGAGCACTACACTAAAAGTCTCTCTCGCATCTCCGCCTCTCTTTTCAATCTGAAATCTCAACA
GCAACCCGAGGAGTGAAAGGTTTGATCATCTGCGAAACCCAGCATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGAGACGAAAG
ATGAGACAGCGATCTAAGTAGTTTTTCCGAGACCGACATTTGTGAGAGTTTTGTTGGTTTTTCTATCTGAATTTCAATGTTTTTTTTGTTGCTGGACCTA
ATAGATTCTATGTTTCAATCAGAACTATGTTTTTATTACATGAATGGTTTTTCTATTTCTACAATCTGCTTATTATTAGTTTTCAATGGTG