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Detailed information on CNT3082972


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLJ9|NU3C_LOBMA, E-value = 1e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201858Brassica junceaPisum sativum8.1424.0989.76166forward
CNT3048549Brassica junceaPrunus dulcis22.2552.6782.82454forward
CNT30162946Brassica junceaPistacia vera4.6143.1288.394reverse complement
CNT30237431Brassica junceaBrassica oleracea25.2510099.22515forward
CNT30146591Brassica junceaMedicago truncatula2.8922.6993.2259forward
CNT30605830Brassica junceaGossypium raimondii8.9229.5591.76182reverse complement
CNT30232585Brassica junceaAnanas comosus9.2655.4389.95189forward
CNT30716815Brassica junceaMalus domestica golden11.6739.2183.61238forward
CNT30353934Brassica junceaEragrostis tef10.233.3389.42208forward
CNT30151885Brassica junceaPrunus persica6.0836.4790.32124forward
CNT30416518Brassica junceaPapaver somniferum6.0329.0889.43123forward
CNT30101297Brassica junceaOryza rufipogon18.9259.1183.16386forward

Expression of CNT3082972

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKASIKADTPSTSKLIAHGYRKTVSTSKTTKTRANI*

>peptide 2 (51 aa)
MSFIRINLLVRAIRIRTVDLLGKRARTYYYQNDSNSFKDPTCIFFCIGLFH*

>peptide 3 (46 aa)
MWKKYPLSQFQSEWIGQGIYNSCVKTKIQVNRIIYFRLVAVVDVSF*

>peptide 4 (31 aa)
MNQQIESNQLEIKNTIISQKLSNYLDLNVIY*

>peptide 5 (44 aa)
MEFIIVSMVFFYFFLIVIVQVFRKRTKTIPTLLFAMHKLNQELG*

Sequence

>CNT3082972
CCATTTTCATTGTTACTGTACCTGCTGTTAAAATAAGGTCCGCCTGTCTAGGACTTGATCTTGGTACTAGCCCATAACGATCAAAGTCAAATCGGGAGCC
TATTAATGAGGCAAATTCAATAAAACAACAACTGGTACCATAAAGAAGCGGCCATAGGCTGGAAAGTCTTGACCAATTTGAAAGATCATTTAACGTAGTT
GAAATAACTGAGTTTTTTGTTGTTCGATCAAGTACGGGAAACTTAATGGAATTCATAATTGTTTCAATGGTTTTTTTTTACTTTTTTTTGATTGTTATTG
TACAAGTATTCAGGAAACGAACTAAGACCATTCCAACGCTCCTTTTCGCCATGCATAAACTAAACCAAGAATTAGGATAAGCACGAAAATGAAAGCTTCT
ATAAAAGCGGATACCCCTAGTACATCGAAACTCATTGCCCACGGATACAGAAAAACGGTTTCAACATCAAAAACAACAAAAACTAGAGCAAACATATAAT
AACGGATTCTAAATTGTAACCAAGCATCCCCGATCGGTTCTATACCTGATTCATAACTAGAAAGTTTCTCCGGCCCCTTCGTAATTGGAGATAAAACCCC
GGAAATTAGAAATGCCAAAACAGGAATAGCACTTGATATTATTAAAAATGCCCAGAAAATATCATATTCGTAAAGCAGAAACATAGACGAACTCCTATGA
ATGTGGAAAAAATACCCGCTTAGTCAATTCCAATCGGAGTGGATTGGGCAAGGTATATATAACTCTTGCGTCAAAACAAAAATTCAGGTTAATCGAATCA
TTTATTTTCGTTTGGTTGCTGTGGTAGACGTCTCCTTTTAAGATTTATTGATTGTAATCTTATTTTCAGTACACTTATTACTTAATATTTCCATGTTTCT
ATTACTAATAGTTTCTCATATTAATAATATAATATTAATATGATTAATAACTAGTAATTTTTTTTATTTCTGTTTCTTAAATTTGCTTTATGTTTTATTT
AAAAATAAAACAAATTGATAAAAATATCTTCGTTTTTAAAATTATGACGTATCAAAAAATCCACTTACGACTATGAAAATGAATGAATAAAAAACGTTTA
TTCTAAATTATAAGTATCTATCTAGATATATCGATAGATAGTGATTGGATCCACTGAAATCAAATTTGGTTTTCCGTTTTATTCTGAACGACCCCCAGGA
CTTATGGTTTAGGGTCTGGGAGTTTTTTTTATGAACCAACAAATTGAAAGTAACCAGTTAGAAATAAAGAATACAATAATAAGTCAAAAATTATCCAATT
ATTTGGATTTGAATGTCATTTATTAGAATAAATTTATTAGTTAGGGCTATACGGATTCGAACCGTAGACCTGCTCGGTAAAAGAGCTCGAACTTATTATT
ATCAAAATGATTCGAACTCTTTCAAAGACCCAACATGCATTTTTTTTTGCATTGGGCTCTTTCATTAACTGATAGAAAGATCAGTTAGTCTACCATATTT
TTTCTTAAAAAAAAAAGATAAGAAATGGTTCCAAGTACTCTGATTGATTATTTTTTAATTCTATAATTCTAATACAATACAGAATAACTACCAAAGTGTT
TCAAAGAAGGGTTCTCTTGACGTAGGTTTGCTTTTGGTCTAGATCAACTTAAGTTAAATATAGTCTCTAACATCCTGATTAAAAAATCAAATATGAAACT
TGCTACACCTTAAGGTTCATAGGACGAAAAGATCATTTTTGAGTTCCTTATACTCATTCTGCCTAGCATTAAGTAGACTGGGTATTCACCCTATCAATAT
CTCAAATCAATGATGGGTTCTATTAATTCCCTACCGAAATGGGGTACTTTAATAGGACCTAATGTCAGGCTATTGTTCTCCTCTTTTTCCTAAAAAAAAG
TCATGGAGTAAGACATCGATTTATTAATAAGATCAATCAATTGGTTTGATTGCGTGATGGACTCCTCTGAAAAACTTTGGCGCACGTGTAAACGAGGTGC
TCTACCTAACTGAGCTATAGCCCTTGTGTTTATGATCCAC