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Detailed information on CNT30201858


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3048549Pisum sativumPrunus dulcis68.854.9985.23474forward
CNT30162946Pisum sativumPistacia vera14.846.7987.25102reverse complement
CNT3086189Pisum sativumVigna radiata38.6164.5683.83266reverse complement
CNT30144549Pisum sativumMedicago truncatula45.1496.2896.14311forward
CNT3082972Pisum sativumBrassica juncea24.098.1489.76166forward

Expression of CNT30201858

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SSIGSNIRAIRTRTVDLLGKTDQTILIKMI*

>peptide 2 (39 aa)
MTPCALISYLDENLRALPKFFKEEGYPDVGLLLAWINLS*

Sequence

>CNT30201858
GAGTAGTATCGGTAGTAATATTAGGGCTATACGGACTCGAACCGTAGACCTTCTCGGTAAAACAGATCAAACTATTCTTATCAAAATGATTTGAATTGTT
TTAAAGACCCAACGTACATTTTTTTTTGCATTGGGCTTTTTCATTAACTGATAGAAATATCAATTAGTCTACCATCTTTTTTCTTTCCACAAAGAAAAAG
GAAATGACTCCCTGTGCTCTGATTTCTTATTTAGATGAAAATCTGAGAGCACTACCAAAGTTTTTCAAAGAAGAAGGTTATCCTGACGTAGGTCTGCTTC
TGGCCTGGATCAACTTAAGTTAAATGGACTCTCTATCAACCTGCTTAAATAAAAATATAAAATAGGAAATGAAACTTCATACACCTTAAAGTTCATAAGA
TAGTAAGAAAAGAGAATTTTTTTGAGGTCCCTAGACTCATTGCCTAGCATTGAATAGATTAAGTATTCACCTTATCAATATCTCAAATCCATTATGGATT
CCATTTGACGTCTAAATCCTTTGTCAGGCTATTGTTCTCGTATTTTGTTCCTGGAGTAAGACATCGATTTATCAATTAAGATCAACTCTTTTAATTACAT
GATGGACTCCTATGAAAAAACATTGGCGCATGTGTAAACGAGGTGCTCTACCTAACTGAGCTATAGCCCTTGTGCTTTTGATACATACA