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Detailed information on CNT30416518


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201861Papaver somniferumPisum sativum28.6117.5988.43121reverse complement
CNT3048549Papaver somniferumPrunus dulcis44.9222.0487.89190forward
CNT30283743Papaver somniferumTriticum aestivum27.6610.2986.32117forward
CNT30146591Papaver somniferumMedicago truncatula28.8446.9286.89122forward
CNT3082972Papaver somniferumBrassica juncea29.086.0389.43123forward
CNT30605830Papaver somniferumGossypium raimondii68.5647.0882.41290reverse complement
CNT30716772Papaver somniferumMalus domestica golden43.9721.3588.71186reverse complement
CNT30627897Papaver somniferumDaucus carota22.936.4590.7297reverse complement
CNT30319150Papaver somniferumAsparagus officinalis27.421.9788.79116reverse complement
CNT30723531Papaver somniferumLupinus angustifolius29.085.0488.62123forward

Expression of CNT30416518

Peptides detected in this lncRNA

>peptide 1 (59 aa)
YEKIFFLRSLYSLCLALNGLCIHLINYRINDGFFLEPKLAPKADRTKYLSGYCSLEYIE*

>peptide 2 (40 aa)
MGCVFTLSIIESMMGSFWSLNWHPKRTEPNICQAIVPLNI*

>peptide 3 (30 aa)
VRKDIFFEVLILIMPSIEWAVYSPYQLSNQ*

Sequence

>CNT30416518
AGTACGAAAAGATATTTTTTTTGAGGTCCTTATACTCATTATGCCTAGCATTGAATGGGCTGTGTATTCACCTTATCAATTATCGAATCAATGATGGGTT
CTTTTTGGAGCCTAAATTGGCACCCAAAGCGGACCGAACCAAATATTTGTCAGGCTATTGTTCCCTTGAATATATAGAGTAAGACACCGATTTATCAATA
AGATCAATTTTGTTGATTGCATGATGGACTCCCCTGAAAAACATTGGCGCGCGTGTAAACGAGTTGCTCTACCAACTGAGCTATAGCCCTTGTGATAGAT
AGTTTATCATGGAAATAATTTCTTGTCAAGATGAATCTTCTATGATCCAACATGATAGCTTCTGATCTGTTTCCTGCCAAGAATTGGTATTGCTTAGAAA
TAAGATTGCATCTATAATTCATC