CANTATAdb - search

Detailed information on CNT30353934

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L395|NDHK_SACHY, E-value = 2e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30201714	Eragrostis tef	Pisum sativum	41.67	86.09	88.85	260	forward
CNT30237431	Eragrostis tef	Brassica oleracea	33.33	40.39	89.42	208	forward
CNT3082972	Eragrostis tef	Brassica juncea	33.33	10.2	89.42	208	forward
CNT30232585	Eragrostis tef	Ananas comosus	35.58	65.1	95.05	222	forward

Expression of CNT30353934

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MKQQLVPYRRGHKLESLDQFERSFGVVEITELELVWSSNGNSIKNNKN*

>peptide 2 (42 aa)
MTYFGSGICSYNRTKEGAIFIVTVPAVKIRSACLGLDLGTNP*

Sequence

>CNT30353934
CTTTGACATAGAGTTCGATCCTCAACAATTTCTCGTGATATCTTCTTACGAAGTTTTGTTAGGGCATCTATAACAGCCTCGGGTTTAGGTGGGCAACCCG
GCAAGTAGACATCCACAGGAATTAACTTATCAACTCCCCGAACAGTACTATAGGAATCCGTACTGAACATTCCCCCTGTAATAGTACAGGCTCCCATAGC
AATGACGTATTTTGGTTCAGGCATTTGTTCATATAATCGCACTAAAGAGGGAGCCATTTTCATTGTTACCGTACCGGCTGTTAAAATTAGGTCCGCTTGC
CTAGGACTTGATCTTGGTACCAATCCATAACGATCAAAGTCGAATCGTGAGCCTATTAATGAAGCAAATTCAATGAAACAACAACTGGTACCGTATAGAA
GGGGCCATAAACTGGAGAGTCTTGACCAATTCGAAAGATCATTTGGTGTAGTTGAAATAACGGAATTGGAACTTGTTTGGTCAAGTAACGGAAACTCAAT
CAAAAACAACAAAAACTAGCGCAAACATGTAATAGCGTATTCGAAATTGTAACCAAGCACCCCCCATGGGTTCTATACCCGATTCATAACTAGAAAGCGT
CTCGGGTCCGTCACTAGCCGGGGC