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Detailed information on CNT30605830


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201861Gossypium raimondiiPisum sativum22.0819.7788.97136forward
CNT30708286Gossypium raimondiiGlycine max36.5352.9483.56225forward
CNT3048549Gossypium raimondiiPrunus dulcis89.2963.8184550reverse complement
CNT30162946Gossypium raimondiiPistacia vera15.142.6687.193forward
CNT30146591Gossypium raimondiiMedicago truncatula20.1347.6987.9124reverse complement
CNT3082972Gossypium raimondiiBrassica juncea29.558.9291.76182reverse complement
CNT30716772Gossypium raimondiiMalus domestica golden81.8257.8682.54504forward
CNT30416518Gossypium raimondiiPapaver somniferum47.8969.7482.71295reverse complement
CNT30723531Gossypium raimondiiLupinus angustifolius21.435.4188.64132reverse complement

Expression of CNT30605830

Peptides detected in this lncRNA

>peptide 1 (65 aa)
SNTLTAELSMSFITIRNHKEKEKGPITSMDYKSNITSKQYQSNRPKGYDYDVGSCSIHLDKKLST*

>peptide 2 (30 aa)
MIMMLDHVVFILTRNYLHNMIKYVSQTQGL*

>peptide 3 (35 aa)
MFFREVYHAIKRIDLFEKSMSYSITLKEQNKRTIA*

>peptide 4 (46 aa)
MYHKHKGYSSVGRAPRLHMRQCFSGKSIMQSKELIFLRNRCLTPLL*

Sequence

>CNT30605830
AAGCAATACTCTAACCGCTGAGTTAAGTATGTCATTTATTACCATAAGGAATCATAAAGAGAAAGAAAAGGGACCTATTACATCGATGGATTATAAATCC
AATATTACTTCTAAGCAATACCAATCAAACCGACCAAAAGGGTATGATTATGATGTTGGATCATGTAGTATTCATCTTGACAAGAAATTATCTACATAAT
ATGATAAAATATGTATCACAAACACAAGGGCTATAGCTCAGTTGGTAGAGCGCCTCGTTTACACATGCGCCAATGTTTTTCAGGGAAGTCTATCATGCAA
TCAAAAGAATTGATCTTTTTGAGAAATCGATGTCTTACTCCATTACTTTGAAGGAACAAAACAAGAGAACAATAGCCTGACAAATGGTTCGGTCCGATTT
GGGTGCCGTTTAGGCAAGATCCGAATCGAACCCATCATTGATTTGAGATATTGATAGGGTGAATACCCGGTCATTCAATGCTAGGCATAATGAGTATAAG
GACCTCAAAAATGCTTTTTTCGTCCTATGAATCTTAAGGTGTATGAAGTTTCATATTTGATTTTTTAATCAGGATGGTAGAGACTCCATTTAACTTAGGT
TGATCTAGGCCAGAAT