Detailed information on CNT3048549


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697664Prunus dulcisOryza sativa16.4751.8281.69142reverse complement
CNT30515237Prunus dulcisJuglans regia44.922.6489.66387reverse complement
CNT30632298Prunus dulcisVigna unguiculata35.8526.2585.11309forward
CNT30201858Prunus dulcisPisum sativum54.6468.3685.14471forward
CNT30708286Prunus dulcisGlycine max26.5753.8885.15229reverse complement
CNT30162946Prunus dulcisPistacia vera10.5641.7490.1191reverse complement
CNT30283743Prunus dulcisTriticum aestivum42.9232.5482.97370forward
CNT30144549Prunus dulcisMedicago truncatula28.5476.1684.96246forward
CNT3082972Prunus dulcisBrassica juncea52.922.3582.68456forward
CNT30605830Prunus dulcisGossypium raimondii63.8189.2983.82550reverse complement
CNT30716772Prunus dulcisMalus domestica golden94.293.2392.61812reverse complement
CNT30627897Prunus dulcisDaucus carota75.5243.2685.56651reverse complement
CNT30416518Prunus dulcisPapaver somniferum22.0444.9287.37190forward
CNT30723531Prunus dulcisLupinus angustifolius54.7619.3486.23472forward

Expression of CNT3048549

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MCSDSLCGFIQEHYQSVSKKGYPDVGLLLA*

>peptide 2 (33 aa)
MMGSILAPKWETESDQTLCQAIVLLFCSLKVIE*

>peptide 3 (58 aa)
MGNRIGPNPLSGYCSLVLFPKSHRVRHQFINKIKYFFDYMMDSSEKHWRACKRGALPN*

Sequence

>CNT3048549
ATTTTTTATTATATAATATTTTTATTTTCTTTTCGTTTTTTATTTTAATTTTTAGGTTTTAGGGCTATACGGACTCGAACCGTAGACCTTCTCGGTAAAA
CAGATCAAACTTATTATTATCAAAATGATTTGAACTGTTTCAAAGACCCAACGTGCATTTTTTTGCATTGGGCTCTTTCATTAACTGATATAAATATCGG
CTAGTCTACCATATTTTTTATTGACAGAAAGATAAAAGGATGGCTCCATGTGCTCTGATTCATTATGTGGATTCATCCAGGAGCACTACCAAAGTGTTTC
AAAGAAGGGTTATCCTGACGTAGGTCTGCTTCTGGCCTAGATCAACTTAAGTTAAATGGAGTTTCTATCGCCCTGCTTGAATCAAATATGAAACTTCATA
CACCTTAAAGTTCATAAGATAGGACGAAAAGAGAGTTTTTTTGAGGTCCTTATACTCATTATGCCTGGCATTGAATAGACAGGTAATTCGCCTTATCAAT
ATCTCAAATCAATGATGGGTTCTATATTGGCACCTAAATGGGAAACCGAATCGGACCAAACCCTTTGTCAGGCTATTGTTCTCTTGTTTTGTTCCCTAAA
AGTCATAGAGTAAGACATCAATTTATCAATAAGATCAAATATTTTTTTGATTACATGATGGACTCCTCTGAAAAACATTGGCGCGCGTGTAAACGAGGTG
CTCTACCTAACTGAGCTATAGCCCTTGTGCTTGTGATACATATTTTATCATGTAGATAATTTCTTGTCAAGATGAATATTACATGATCCAACATTATATC
TCTTTGATCCGTTTGATTGGTATTGCTTATAATTAATATTACATTTATAATCCATCAATGTG