Detailed information on CNT30523832


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 4e-151

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676056Setaria italicaSetaria viridis75.5146.9100552forward
CNT30318337Setaria italicaCorylus avellana20.6649.5182.78151forward
CNT30548454Setaria italicaIpomoea triloba8.4826.8487.162forward
CNT30514102Setaria italicaJuglans regia26.9522.0981.22197forward
CNT30248696Setaria italicaAvena sativa74.9739.2390.33548forward
CNT30571440Setaria italicaVitis vinifera25.7243.8282.98188forward
CNT30147901Setaria italicaBrachypodium distachyon19.8451.7982.76145forward
CNT3064891Setaria italicaSelaginella moellendorffii10.5323.488.3177forward

Expression of CNT30523832

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MPAPGASLSNAKDLRLRYMSWSCFSSDPDAFENTLVAASLSGTPSSSACSWACLRT*

>peptide 2 (94 aa)
MWHLQLPEQAQMPCASPSCLPLERHCRMQRTCGSGTCPGAASHRTLMHLRTPLLLPLLVGHPAPLPAPGHACAHSSSLLAHLVQRPSSLRGPTGS

Sequence

>CNT30523832
CTCCCAATAGCCTCTGCCGCTGGCTTCTAGGAAGGTCTGGACCAGCTTCCTGAATGAGTTGGGGTTGGTCTCCATGAGCCTCTTCCTCATCGCCTCATCT
TCAATGAATGTGGAATTTGCCTCCTCATAAACCCAGTTGTCAACTTGTCCGGATGTTGCACTCCACCCAACAGTGTTTGTGAGCCGCTTCTCGATCTCTC
TAACTCCCTCATAGCCGCTCTTCATCATCCCCTCATACCACTTTGGGTTCAGTAGCTTTGTCCTTGCATCAAGACGCACCGTCTCCGACAGTGTTCTCAC
CTGTGCATTTGCTGTGGTTGTATCTGCTATGTAAGAGGCAGGTGCCCGTCCATCCTTCCGCAGCCCTTGCACCAGCTTTGTTGGGTCCGAGTCGAAGTAG
TGGCTCACATCTGTCAGTGAGATCTCCGACGAGTCGAGGTTCTGGAATGTGGCATCTGCAGTTGCCAGAGCAAGCTCAAATGCCTTGCGCTTCTCCTTCA
TGCCTGCCCCTGGAGCGTCACTGTCGAATGCAAAGGACTTGCGGCTCAGGTACATGTCCTGGAGCTGCTTCTCATCGGACCCTGATGCATTTGAGAACAC
CCTTGTTGCTGCCTCTCTTAGTGGGACACCCAGCTCCTCTGCCTGCTCCTGGGCATGCTTGCGCACATAGTTCATCTCTACTGGCTCATCTAGTTCAGCG
ACCATCTTCACTGCGCGGTCCAACAGGTTCA