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Detailed information on CNT30248696


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 1e-131

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692202Avena sativaOryza sativa29.7881.0990.87416forward
CNT30676056Avena sativaSetaria viridis37.5144.5290.08524forward
CNT30523832Avena sativaSetaria italica39.2374.9790.33548forward
CNT30318337Avena sativaCorylus avellana11.5252.7980.75161forward
CNT30514102Avena sativaJuglans regia14.3922.5381.59201forward
CNT30378440Avena sativaArabidopsis thaliana4.6522.3490.7765forward
CNT30382125Avena sativaManihot esculenta7.7328.3584.26108forward
CNT30179310Avena sativaSecale cereale11.9551.794.01167forward
CNT30173073Avena sativaTrifolium pratense11.1733.4880.13156forward
CNT3017375Avena sativaZea mays24.3438.6883.82340forward
CNT30680746Avena sativaTriticum urartu28.3551.2394.7396forward
CNT30571440Avena sativaVitis vinifera13.4643.8281.38188forward
CNT30147901Avena sativaBrachypodium distachyon7.8739.2989.09110forward
CNT30116351Avena sativaOryza nivara30.0647.1490.95420forward
CNT30551403Avena sativaOryza brachyantha20.1149.7390.39281forward
CNT30726108Avena sativaLupinus angustifolius14.5322.9982.27203forward

Expression of CNT30248696

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSSPVHLLWLCPLCMRKVPAHPSAALAPASSGPSRSSG*

>peptide 2 (77 aa)
MYEEGLKQLPERVGIGLHEPFPHFFIFDECGICLLINPVVHLPRCCTPSNSIRQPLLNLSNSLVATLHHSLVPPRVQ*

>peptide 3 (31 aa)
MWYLPPHKPSCPLAQMLHSIQQYSSAASQSL*

>peptide 4 (31 aa)
MWYLPPHKPSCPLAQMLHSIQQYSSAASQSL*

>peptide 5 (93 aa)
MWLRLLLEQAQTSCVSPACLPLEHHCQMQMTCGSGTCPEAASHLSMLHSPRPSSHLTSKSQMHLRTPLLPPLLPRHQALLPAPGHACAHSSSLL

Sequence

>CNT30248696
CTAAAACTCAAGTGTTATTTGGCTAAACATTTAAAATGACACTCCATTCTCGGTGACTATATTTGTAGATGAACAAGTGACATCAAGTAACAAAATTTCC
AAAGAAAGAACTTCTACTCATGCTTTCTTTTTACATTCACAACCAATCACCCTCTTGTTAAAGGCCTGTATTTCATGTTACAACTTTTATAAATCACAAA
TTATACAAGTTTGAACTCAACGAGACAGAAGAATTTCTTCTTCTTGGTCAAATGATGGAACTGGTCTATTGATCAACTGAGTTCACCGGTCAATTCCTTC
GATCTTGTCTTCAACCTCTGAGTATAGCTCCTTGAGCCTTTCCAAGTTATCCTCGGATGTCTCCCAGTAGCCTCTGCCATTGGCTTCTAGGAAGGTTTGA
AGCAGCTTCCTGAACGAGTTGGGATTGGTCTCCATGAGCCTTTTCCTCATTTCTTCATCTTCGATGAATGTGGTATTTGCCTCCTCATAAACCCAGTTGT
CCACTTGCCCAGATGTTGCACTCCATCCAACAGTATTCGTCAGCCGCTTCTCAATCTCTCTAACTCCCTCGTAGCCACTCTTCATCATTCCCTCATACCA
CCTAGGGTTCAGTAGCTTTGTCCTTGCATCAAGACGCATCGTCTCCGACAATGTCCGCACCTGTGCATTTGCTGTGGTTGTGTCCGCTATGTACGAGGAA
GGTTTGAAGCAGCTTCCTGAACGAGTTGGGATTGGTCTCCATGAGCCTTTTCCTCATTTCTTCATCTTCGATGAATGTGGTATTTGCCTCCTCATAAACC
CAGTTGTCCACTTGCCCAGATGTTGCACTCCATCCAACAGTATTCGTCAGCCGCTTCTCAATCTCTCTAACTCCCTCGTAGCCACTCTTCATCATTCCCT
CGTACCACCTAGGGTTCAGTAGCTTTGTCCTTGCATCAAGACGCATCGTCTCCGACAATGTCCTCACCTGTGCATTTGCTGTGGTTGTGTCCGCTATGTA
TGAGGAAGGTGCCCGCCCATCCTTCCGCAGCCCTTGCACCAGCTTCGTCGGGTCCGAGTCGAAGTAGTGGCTGACATCTGTGAGTGAGATCTCTGACGAG
TCCAGGTTCTGGAATGTGGCTTCGGCTGTTGCTAGAGCAAGCTCAAACGTCTTGCGTTTCTCCAGCATGCCTACCCCTGGAGCATCACTGTCAAATGCAA
ATGACTTGCGGCTCAGGTACATGTCCTGAAGCTGCTTCTCATCTGTCCATGTTGCATTCTCCACGGCCAAGTTCACATTTGACGAGTAAGAGCCAGATGC
ATTTGAGAACACCCTTGTTGCCGCCTCTCTTACCGAGACACCAAGCTCTTCTGCCTGCTCCAGGGCATGCTTGCGCACATAGTTCATCTCTACTGGC