Detailed information on CNT30571440


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FNB0|CHLH_ARATH, E-value = 2e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676056Vitis viniferaSetaria viridis37.313.5981.88160forward
CNT30523832Vitis viniferaSetaria italica43.8225.7282.98188forward
CNT30514102Vitis viniferaJuglans regia77.3937.2287.35332forward
CNT30727458Vitis viniferaCorchorus capsularis78.0951.9485.97335forward
CNT3084502Vitis viniferaVigna radiata78.7929.1984.91338forward
CNT30173073Vitis viniferaTrifolium pratense86.7179.8383.33372forward
CNT30248696Vitis viniferaAvena sativa43.8213.4681.38188forward
CNT30681154Vitis viniferaTriticum urartu60.3734.1279.54259forward
CNT3031765Vitis viniferaTheobroma cacao9.32209540forward
CNT30726206Vitis viniferaLupinus angustifolius56.4123.6384.71242forward

Expression of CNT30571440

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MPAPGASQSNAKDFRLKYMSCSCFSSFHEEFSTARFILDEYEPDALEKTRVAASRTSMPRA*

>peptide 2 (69 aa)
MSQGFGMWHQLCLEPSQRPSSSQSCLHQGRHSQMRRTSGSSTCLAAASHHSMRNSQQQDLYWMSMSLMH*

Sequence

>CNT30571440
CTCACCTGGGCATTAGCTGTGGTTGTGTCAGCAATGTATGCATTAGTGGGATCTGAGTCGAAGTAGTGACTCACATCAGTGAGTGAGATTTCTGATGAGT
CAAGGTTTTGGAATGTGGCATCAGCTGTGCTTAGAGCCATCTCAAAGACCTTCCTCTTCTCAGTCATGCCTGCACCAGGGGCGTCACAGTCAAATGCGAA
GGACTTCCGGCTCAAGTACATGTCTTGCAGCTGCTTCTCATCATTCCATGAGGAATTCTCAACAGCAAGATTTATATTGGATGAGTATGAGCCTGATGCA
TTAGAGAAGACACGGGTTGCAGCGTCTCGAACCTCAATGCCAAGGGCTTGAGCTTGCTCTAGTGCATGCTTCCTGACATAGTTCTGGTCTGCTGGCTCGT
CTAGCTCAGCAACCATCTTCACTGCCCGG