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Detailed information on CNT30378477


BLAST search results

BLAST vs Swiss-Prot:
sp|F4KIB2|TMN8_ARATH, E-value = 2e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695507Arabidopsis thalianaOryza sativa60.4331.2980.39362forward
CNT30671488Arabidopsis thalianaSetaria viridis45.7469.3783.58274forward
CNT30160060Arabidopsis thalianaPistacia vera55.5932.1484.38333forward
CNT30469220Arabidopsis thalianaSaccharum spontaneum75.4630.7579.42452forward
CNT30366883Arabidopsis thalianaSorghum bicolor44.9146.6282.53269forward
CNT30103143Arabidopsis thalianaOryza rufipogon72.4533.2380.18434forward
CNT30577272Arabidopsis thalianaOryza barthii72.4542.3879.72434forward
CNT3063675Arabidopsis thalianaSelaginella moellendorffii13.3623.8892.580forward

Expression of CNT30378477

Peptides detected in this lncRNA

>peptide 1 (58 aa)
IDEPCEPETSIEPYCSCEHKKCVGGDEHVPKVKHRRDQFGDLKLCEEVERGIEEEVES*

>peptide 2 (56 aa)
MDVRMKKSSMKTAPNGKIPPMRIEKTGFMYQACSGICLGILLVFTGSSAAGFLNPM*

Sequence

>CNT30378477
ATAGATGAGCCTTGTGAACCAGAGACAAGCATAGAACCCTATTGTTCCTGTGAGCACAAAAAATGCGTAGGAGGCGATGAGCATGTACCCAAAGTAAAGC
ATCGCAGAGACCAGTTTGGTGATCTGAAGCTTTGTGAAGAAGTAGAACGTGGCATAGAGGAAGAGGTAGAGAGCTGATGAGCCTGATGTGAGGTATGATC
TCCACCACCAAAGGTAGTCCTCACTGCAAAGCTGGAAGTAGCAGAGTACTACGGTTATCTCGGCGCAAGTCACAATGAGGATTACAAAGACGAGGAAGAG
GAACCCAAAGATGTAGTAGAACTGGTTGAGCCAGATGGATGTGAGGATGAAGAAGAGCTCGATGAAGACTGCACCAAACGGTAAGATTCCTCCAATGAGG
ATTGAGAAAACCGGGTTCATGTACCAAGCTTGCTCTGGGATTTGCCTCGGGATTTTGTTGGTTTTCACTGGGTCATCAGCCGCTGGCTTCTTGAACCCAA
TGTAACCCCCAACAAAGACGAGAGGAACTGAGATGCCAAACCAGAGGAAGATCAAGGCGAACATTGTTCCAAAGGGGACAGCCCCAGATGACTTCTGTC