Detailed information on CNT30366883


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671488Sorghum bicolorSetaria viridis26.1738.2386.09151forward
CNT30549621Sorghum bicolorIpomoea triloba25.339.8981.51146forward
CNT30378477Sorghum bicolorArabidopsis thaliana46.6244.9182.53269forward
CNT30381565Sorghum bicolorManihot esculenta32.4144.9580.75187forward
CNT30406390Sorghum bicolorBeta vulgaris20.127.6281.9116forward
CNT30160060Sorghum bicolorPistacia vera37.9521.1482.65219forward
CNT30443000Sorghum bicolorAegilops tauschii20.2824.9585.47117forward
CNT30314293Sorghum bicolorCamelina sativa25.8246.4280.54149forward

Expression of CNT30366883

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSGMTSTTTGNPRCRAGSNIAQSRSQHMSR*

Sequence

>CNT30366883
GTGGCAACAAAGAATTAGGCAAGAGTGCACTTCACCTTACTCGATCTTGACCGATGAGTAAATCAGCCTTGTGAACAGGAAGCACGCATAGAATCCGATT
GTGCCGGTCAAGGCAAAGAAGGCATATGAGGCAATGAGCATGTAACCAAAGTACAGAACTGCTGAGACAAACTTGGTGATCTCAAGCTTTGTGAAGAAAT
AGAAGGTTGCATACAAGAAGAGGTAGAGTGCAGAGGAACCAGATGTCAGGTATGACCTCCACCACCACAGGTAATCCTCGCTGCAGAGCTGGAAGTAACA
TAGCACAATCGAGATCTCAGCACATGTCACGATGAGAATCAGGAACACAAGGAAGAGGAACCCAAAGATGTAGTAGAACTGGTGCAGCCAGATGGAGGCC
TGAAAACATCACCGTGAACAAGCTTCCATCCTGTCTCCTCCTGGGCCTCTTCCTGAGTCTCAAGTTGGTTATACTTGGAGATATCCCGGTAAAGGGTACG
GAGCATGATCATCGCAACCATTCCAGAAAGGAAGAGGACAATCATGAGAGAATTCACAATTGAGAACCAGTGGATCT