Detailed information on CNT30555842


BLAST search results

BLAST vs Swiss-Prot:
sp|P13869|CB12_PETHY, E-value = 3e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671443Oryza glaberrimaSetaria viridis33.7216.1494.87117forward
CNT30520701Oryza glaberrimaSetaria italica33.7221.3594.87117forward
CNT30288773Oryza glaberrimaTriticum aestivum33.7244.6694.87117forward
CNT30220915Oryza glaberrimaHordeum vulgare18.7328.6393.8565forward
CNT30437396Oryza glaberrimaAegilops tauschii27.6725.3392.7196forward
CNT30657523Oryza glaberrimaTriticum dicoccoides33.7213.8694.87117forward
CNT303496Oryza glaberrimaZea mays17.2923.5398.3360forward
CNT30126375Oryza glaberrimaCorymbia citriodora22.7724.1688.6179forward
CNT30680526Oryza glaberrimaTriticum urartu33.7221.1694.87117forward
CNT30496219Oryza glaberrimaDigitaria exilis17.2926.5596.6760forward

Expression of CNT30555842

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MGPVPVYSAWNQAPMTASMASRPFLISLVRSSLIF

>peptide 2 (94 aa)
DLINITEPTTTVLLCYINHNSDSVMKRTSLLKEYQLVFYIGYIIVQVHNQQGMQCSIHNYIPIHHHHSQPTPIPKKRGCRWGRCRCTLPGTKLP*

Sequence

>CNT30555842
ATGATCTCATCAACATTACAGAGCCTACTACTACGGTACTACTCTGCTACATAAATCACAACTCTGATTCAGTGATGAAGAGAACTTCACTTCTAAAAGA
GTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCAC
CATTCACAGCCTACTCCGATCCCAAAAAAGAGAGGTTGTCGATGGGGCCGGTGCCGGTGTACTCTGCCTGGAACCAAGCTCCCATGACGGCGAGCATGGC
GAGCCGTCCGTTCTTGATCTCCTTGGTGCGCAGCTCCTTGATCTTCT