Detailed information on CNT30556737


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671443Panicum halliiSetaria viridis23.2114.76100107forward
CNT30288773Panicum halliiTriticum aestivum16.4929.0196.0576forward
CNT303496Panicum halliiZea mays31.8957.6597.28147forward
CNT30680526Panicum halliiTriticum urartu22.9919.1794.34106forward
CNT30496219Panicum halliiDigitaria exilis29.560.1898.53136forward

Expression of CNT30556737

Peptides detected in this lncRNA

>peptide 1 (88 aa)
LTSIAFLHWLQHSTSTGSHRHASLRKPFNHHGQSIPPHKKKKESHRSTINLTISTTMHASLQSQIANSNSSFRGEGLIKNTTKKITNQ*

>peptide 2 (30 aa)
MHRSANHSIIMDSLSRPTKRKKSRIDRPST*

>peptide 3 (41 aa)
MVAWPGSASMARRPFLISLVRSSLIFSGEPLPQPSGSNHRPP

>peptide 4 (50 aa)
MWIDSADLEDGGVAGVGEHGEAAVLDLLGAQLLDLLRRAAAPAERVKPQAT

Sequence

>CNT30556737
CTAACGAGTATTGCATTTTTACATTGGTTACAACATAGTACAAGTACAGGATCACACAGGCATGCATCGCTCCGCAAACCATTCAATCATCATGGACAGT
CTATCCCGCCCCACAAAAAGAAAAAAGAGTCGCATCGATCGACCATCAACCTAACAATCTCCACCACCATGCATGCGTCGTTGCAATCTCAGATCGCTAA
CTCCAACTCCTCATTTCGGGGTGAAGGCCTGATCAAGAACACAACAAAAAAAATCACCAATCAGTAACCAAATCGTATATATATCAAAGCTATGGGGTAT
TGCTATAATGTGGATTGATTCAGCTGACCTGGAAGATGGTGGCGTGGCCGGGGTCGGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGGTGCGCAG
CTCCTTGATCTTCTCCGGCGAGCCGCTGCCCCAGCCGAGCGGGTCAAACCACAGGCCACCA