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Detailed information on CNT30242898


BLAST search results

BLAST vs Swiss-Prot:
sp|A2X7F7|PAL2_ORYSI, E-value = 6e-179

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628619Avena sativaVigna unguiculata27.9545.578.8415forward
CNT3096379Avena sativaSolanum tuberosum8.2229.5486.07122forward
CNT30553532Avena sativaOryza glaberrima10.4420.4285.16155forward
CNT3075415Avena sativaBrassica juncea16.6326.2581.78247forward

Expression of CNT30242898

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MTSQNTAESTSARTARMFASKSTVDARPEPTAV

>peptide 2 (94 aa)
GDLVFSPVRYAVPSSSRTNRYRGYERQSVILFGVEAVPASTAARAASIAIGSVCRSSSSNWATLPKTEVSTLNSAMPLERARSTSTLRSFFISG*

>peptide 3 (63 aa)
MWRRSMAWHMATKNVEDMILRISMASAVFLDEMRPREFTSWLCCSALWTWFVTGFPKNCSSEQ*

>peptide 4 (34 aa)
MGHQHMQTPPHGRSPGEDLSHRSEPRGDHQQSWC*

Sequence

>CNT30242898
TGGTGACCTTGTCTTCTCACCGGTCAGGTATGCTGTTCCGAGCTCCTCACGCACAAACCGGTACAGAGGGTATGAACGACAATCAGTGATTCTGTTCGGT
GTTGAAGCTGTGCCAGCCTCCACAGCGGCACGTGCAGCCTCGATCGCCATCGGCAGTGTCTGTCGAAGCTCCTCCTCAAATTGGGCAACCTTGCCCAAAA
CAGAGGTCTCCACATTGAACTCGGCCATGCCGTTGGAGAGGGCACGCTCGACGAGCACACTGCGTAGTTTCTTCATAAGTGGGTAGTTTGTGCTGCATGG
GTCATCAGCATATGCAAACACCGCCTCACGGTCGATCTCCTGGAGAAGATCTTTCTCACAGAAGCGAGCCACGTGGAGACCACCAGCAGAGTTGGTGCTG
AGTGTCTTCTTGGCCACTGTCATCACACAGCTCTTGACAGCGCTCTTGACATTTTCCTCGATGTGGCGAAGATCAATGGCCTGGCATATGGCAACCAAGA
ACGTCGAGGACATGATCTTGAGGATATCAATGGCCTCGGCGGTCTTCCTGGACGAGATGAGACCAAGGGAGTTTACGTCCTGGTTGTGCTGCTCGGCACT
CTGGACATGGTTTGTCACTGGGTTCCCCAAGAACTGTAGCTCCGAGCAGTAAGAGGCCATGGCGATCTCAGCCCCCTTGAAGCCATAGTCCAAGCTCGGA
TTGCGCCCACCAGACAAGTTTGATGGCAGACCGTTGTTGTAGAGATCATTGACCAACTCTGAAAACTGAGCAAACATGAGCTTACCAATGGCAGCAATAG
CAAGTCGGGTGTTGTCCATGGACACGCCTATGGGCGTACCCTGGAAATTGCCACCGTGAATCGCCTTGCCACGGGAGACATCGATAAGTGGATTGTCNNN
NNNNNNNGCCTCCAAGCTCGGATTGCGCCCACCAGACAAGTTTGATGGCAGACCGTTGTTGTAGAGATCATTGACCAACTCTGAAAACTGAGCAAACATG
AGCTTACCAATGGCAGCAATAGCAAGTCGGGTGTTGTCCATGGACACGCCTATGGGCGTACCCTGGAAATTGCCACCGTGAATCGCCTTGCCACGGGAGA
CATCGATAAGTGGATTGTCATTGACGGAGTTGATCTCACGCTCAATTGACTTGGTAGCGGCACGGATAACCTCAATCTGGGGACCGAGCCACTGAGGTGA
CGTGCGGAGTGCATACCGGTCTTGCTTTGGCTTCATCAGTGGGTCGAGGTCGCCAAGCTTCTTGGCAAGCTTCATGTAGGAGCTTCCCTCCAAGATGTGC
TCCATGATAGCAGCAGCTTCTATTTGTCCAGGATGATGCTTCAGCTTGTGGGTCAGGTGGTCCGTGTACTCTGGCTTGCCGTTCATGACCTCACAAAACA
CAGCTGAAAGTACCTCGGCAAGGACGGCAAGGATGTTTGCCTCAAAGAGCACGGTTGATGCAAGACCAGAGCCCACGGCCGTGCC