Detailed information on CNT3092362


BLAST search results

BLAST vs Swiss-Prot:
sp|P35511|PAL1_SOLLC, E-value = 0.0

BLAST vs NONCODE:
NONSTUT002995, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3069045Solanum tuberosumQuercus suber22.3997.781.18425forward
CNT30628619Solanum tuberosumVigna unguiculata29.8262.0681.98566forward
CNT30710196Solanum tuberosumGlycine max8.5422.7583.95162forward
CNT30636617Solanum tuberosumCapsicum annuum62.0190.492.611177forward
CNT30510944Solanum tuberosumSolanum lycopersicum25.9799.895.33493forward
CNT30573527Solanum tuberosumVitis vinifera51.8464.4481.91984forward
CNT3024978Solanum tuberosumPopulus trichocarpa32.8284.7679.94623forward
CNT30592821Solanum tuberosumEragrostis curvula435.5186.8476forward

Expression of CNT3092362

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKFPISTHCQSSLSYLANCVLDSTLQVLLQMP*

>peptide 2 (35 aa)
MTLASRYQQPQLFSWLRLSPRNSHLGCVAQHFGHG*

>peptide 3 (46 aa)
METPIGVPWKLPPCKALFLETSINGLSFTELISLSIILVAARMTSI*

>peptide 4 (50 aa)
KKVTYNIQIRAWTKTSITSNTSFTRRKYRLQRRKEHKLNFDFNNKTKFYK*

>peptide 5 (51 aa)
MELLSFLDIRAAIQNVFHNSSSLNLTRVMLQLVCQIVSEFGLSVHHFSENR*

>peptide 6 (55 aa)
MILVIHHKVKKEFEKITHLADWQRSTIPALETLQQWINNLSITHCCKHLVNLLTG*

>peptide 7 (64 aa)
MLDSNRTIDAIAEPTAVPFTSASPSLGCNSKNPPVTPATRKASSALSFSPLGPTTLELGLPVSKP

>peptide 8 (51 aa)
MVSHWICQELKFRAVRSHRNFSALETIVQAWIPSCCQIRWQPVVVIVVDKL*

Sequence

>CNT3092362
AAAAAAGTTACTTATAATATTCAGATAAGAGCTTGGACCAAGACCAGTATAACATCAAACACCAGTTTCACAAGAAGAAAATACAGATTACAGAGAAGGA
AAGAACACAAATTGAACTTTGATTTCAATAACAAAACTAAATTTTACAAGTGATCCGATACGGTACTCATTTAACTAGGCAACTTCCTCTAACTATGTAA
ACTAAGCACATGTAGAACTAAAAGTATGTTAACTACATATTCTGATTCTCATCTTGGGCACCTTAGTTGAGCCAATATTACATACAGTCAAAAAGAAAAT
AAAAAAATTATATAAGTTCATAACGTTATTATGATTCTAGTAATTCACCATAAGGTAAAAAAAGAATTTGAAAAAATAACACATTTAGCAGATTGGCAGA
GGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATAATCTGTCCATTACACATTGCTGTAAACACCTTGTCAATCTCCTCACCGGGTGATC
GAACTTTTTCACCTGTCAACAATTCTGTTCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGAAGG
GTTGCCACTTTCAACAACAGCTCTTACACTCTCAACTTCTTTAGGCAACACAGCGATTAATTCGTCCTCGAAAGCTCCAATCTTTTGGAAGATTGAGCTG
TTGACATTCTTCTCACTTTCACCATTCTTCATTGCTTGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGTTGGAGCTGCAGGGGTCATCTG
CATAGGCAAACAAGTATTCCCTATCCACGACTCGAAGCAATTCCTTCTCACAGAATCTTGCTGGATGAAGTTCCCCATTAGCACCCATTGTCAAAGTTCT
CTTAGCTACTTGGCTAACTGTGTTCTTGACAGCACTCTTCAAGTTCTCCTCCAAATGCCGTAAGTCTATAGCTTGGCAAAGCGCCACGAGATAGGTTGAT
GACATTAGCTTCAAGATATCAACAGCCTCAGCTGTTTTCCTGGCTGAGATTAAGCCCAAGGAATTCACATCTTGGTTGTGTTGCTCAGCACTTTGGACAT
GGTTAGTCACTGGATTTGCCAAGAATTGAAGTTCCGAGCAGTAAGAAGCCATCGCAATTTCAGCGCCCTTGAAACCATAGTCCAAGCTTGGATTCCTTCC
TGCTGTCAGATTAGATGGCAACCCGTTGTTGTAATAGTCGTTGACAAGCTCTGAGAATTGGGCAAACATCAATTTACCAATTGATGCAAGGGCTAATCGT
GTATTATCCATGGAGACACCAATAGGGGTGCCTTGGAAGTTGCCACCATGTAAGGCCTTGTTTCTTGAAACGTCGATCAATGGATTGTCGTTCACTGAGT
TAATCTCCCTCTCGATCATCTTAGTTGCAGCACGGATGACTTCAATTTGAGGGCCAAGCCATTGTGGAGATGTTCGGAGAGCATAACGATCTTGCTTTGG
TTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTTCCTTGACATAAGAGCTGCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGACCA
GGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCGGGCTTTCCGTTCATCACTTCAGCGAAAATCGCTGATAAAACTTCAGACATAACAGCAA
GAATGTTGGACTCAAACAGGACTATTGATGCCATAGCAGAACCAACTGCTGTGCCATTCACAAGTGCAAGTCCTTCCTTAGGCTGCAACTCGAAAAATCC
ACCAGTAACACCAGCCACGCGGAAAGCTTCCTCAGCATTAAGTTTCTCACCATTGGGCCCAACAACCTTGGAGTTAGGCCTGCCAGTGAGCAAACCAG