« Back to Cucumis melo search


Detailed information on CNT3038180


BLAST search results

BLAST vs Swiss-Prot:
sp|P45734|PALY_TRISU, E-value = 0.0

BLAST vs NONCODE:
NONVVIT002503, E-value = 3e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3069045Cucumis meloQuercus suber27.669.6679.87303forward
CNT30628619Cucumis meloVigna unguiculata65.5778.9581.25720forward
CNT30710382Cucumis meloGlycine max16.4828.1586.19181forward
CNT30165848Cucumis meloPistacia vera16.327.8481.56179forward
CNT30636813Cucumis meloCapsicum annuum26.9617.3780.74296forward
CNT3092074Cucumis meloSolanum tuberosum39.8923.480.14438forward
CNT30510944Cucumis meloSolanum lycopersicum39.888.4679.18437forward
CNT3075415Cucumis meloBrassica juncea22.3126.0478.78245forward
CNT30358787Cucumis meloLactuca sativa8.1123.9284.2789forward
CNT30573527Cucumis meloVitis vinifera30.62283.63336forward
CNT3023983Cucumis meloPopulus trichocarpa38.9841.3982.24428forward
CNT30329128Cucumis meloDioscorea rotundata30.613.2278.27336forward
CNT30592821Cucumis meloEragrostis curvula6.7434.5886.4974forward

Expression of CNT3038180

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLSITQSLLALTPALADSANSTTTSLSRVAMAAT*

>peptide 2 (89 aa)
MGSSTKAGSDTITISAFTHALHHPIAASFDASPCRFSQFYNDIIITSGNGSNLRNGESFSSKLHQRPSILFHHPFHLIQMTSLHGISRQT

>peptide 3 (51 aa)
MEANPEPTAVPLTRARPSLGCNSKNPESIPACSKAAFASRVSPLGPIAFEL*

>peptide 4 (36 aa)
ALFLETSIKGLSLTELISLSIDLVEKRITSIKGPNH*

Sequence

>CNT3038180
GTGCCTTGTTTCTTGAAACATCAATCAAAGGATTGTCGTTGACTGAATTAATTTCCCTCTCAATTGACTTGGTGGAGAAACGAATCACTTCAATCAAGGG
ACCCAACCATTGAGGAGAAGTTCTAAGAGCATAACGATCTTGTTTGGGCTTTTGGAGAGGATCCATTTCATGCAATTTCTTTGCCGTTTTCATGTAGGAG
CTGCCATCTAAAATGTGCTCCATGATTGCAGCTGCTTCAATTTGACCAGGGTGGTGCTTCAACTTATGAGTCAAATGGTCAGTGAATTCGGGTTTTCCTT
GCATCACCTCAGCAAATATTGCAGATAAAATTTCAGACAAAACAGCTAAAATATTTGCCTCAAAAAGAACAATGGAAGCCAACCCAGAACCGACGGCAGT
GCCATTAACAAGAGCAAGACCTTCCTTAGGTTGCAACTCAAAGAACCCAGAATCAATACCAGCTTGTTCAAAAGCAGCCTTTGCATCGAGGGTTTCTCCA
TTAGGTCCAATAGCTTTTGAATTGTGACGACCAGTAAGCAACCCCGCAATATAAGACAAAGGAACCAAATCTCCAGAAGCAGTAATTGTTCCTCGAAGTG
GCAAACATGGAGTGACGTTGTGGTTCAAGAGATTAGCAATCGCTTCCAAAATCTCGAATCGAATGCCAGAATACCCTTGCAGAAGAGTGTTGATTCTCAC
CAACATGGCTGCTCTTGTTGCGGAATGAGGCAAAGTGTGATTCGATTCACTTCCATTCCCAAAGATGCCAGAATTTAGGAATCGAATCAACTCCTTTTGA
AGAGCTCCACCTTGATTGGTTCTTCTATGGGAAGTAGCACCAAAGCCGGTAGTGACACCATAACTATCAGTGCCTTTACCCATGCTCTCCATCACCCAAT
CGCTGCTAGCTTTGACGCCAGCCCTTGCAGATTCAGCCAATTCTACAACGACATCATTATCACGAGTGGCAATGGCAGCAACCTGAGAAATGGTGAGAGT
TTCTCCTCCAAGCTTCACCAGAGGCCTTCGATACTCTTCCACCATCCTTTTCACCTCATCCAAATGACTTCCCTTCATGGAATCAGCCGCCAAACCCC