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Detailed information on CNT30618415


BLAST search results

BLAST vs Swiss-Prot:
sp|O64964|TIP11_MAIZE, E-value = 8e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549654Sesamum indicumIpomoea triloba28.6949.7281.01179forward
CNT30727221Sesamum indicumCorchorus capsularis20.9929.1183.21131forward
CNT30382128Sesamum indicumManihot esculenta12.9820.7788.8981forward
CNT30524765Sesamum indicumPhaseolus vulgaris31.4124.4478.57196forward
CNT30628528Sesamum indicumVigna unguiculata33.3323.4580.77208forward
CNT30708652Sesamum indicumGlycine max33.3367.181.25208forward
CNT3084637Sesamum indicumVigna radiata33.3318.0779.81208forward
CNT30146554Sesamum indicumMedicago truncatula27.446.0980.7171forward
CNT30620034Sesamum indicumCajanus cajan32.3719.2281.19202forward
CNT30176366Sesamum indicumVigna angularis33.3343.4280.77208forward

Expression of CNT30618415

Peptides detected in this lncRNA

>peptide 1 (37 aa)
RFHPSLGRRRWRRPCRRARRSSQSQKRRRSRQTRRRR*

>peptide 2 (59 aa)
MPEPEPAKTNTRVLMNSATAAFTAPGWRNSSWLPMATRRRGTLKYSPGMVGEWRTRLEG*

>peptide 3 (54 aa)
MFPPTNSPNVTAGLTWPPEMLAPMATATNSPKAWATEAAMRPAGVLGAFPVSLL*

>peptide 4 (51 aa)
DFTLLWVDGGGVDRVDEPEGHHNLKNEGAPDRHAGDGECGNCLYIFIPRVN*

>peptide 5 (83 aa)
MGNGGSDEAGGGVGGVSSELVVGNARARAGEDEHEGTDELSHRRLHGAGLAELIVAADGDAAEGDVEVLARHGRRMEDKTGGLV

Sequence

>CNT30618415
CGATTTCACCCTTCTTTGGGTCGACGGCGGTGGCGTAGACCGTGTAGACGAGCCCGAAGGTCATCACAATCTCAAAAACGAAGGCGCTCCAGACAGACAC
GCCGGAGACGGTGAATGCGGGAATTGCCTGTATATTTTCATACCCAGAGTAAACTAGCTAGTTAGCATCAAACACAGAGAGATATTTGGATCTGTGTATG
TGGAGCAGGAGGCAAGCAACAATGGAGCCGAGCAACTGAGCGATGATGTAGAGAATACCACGGAACAGAGTGATGTTTCCACCAACAAACAGCCCAAACG
TGACTGCGGGGTTGACGTGGCCGCCGGAAATGTTAGCGCCAATGGCGACAGCCACGAACAGTCCGAAAGCATGGGCAACGGAGGCAGCGATGAGGCCGGC
GGGGGTGTTGGGGGCGTTTCCAGTGAGCTTGTTGTAGGCAATGCCAGAGCCAGAGCCGGCGAAGACGAACACGAGGGTACTGATGAACTCAGCCACCGCC
GCCTTCACGGCGCCGGGCTGGCGGAACTCATCGTGGCTGCCGATGGCGACGCGGCGGAGGGGGACGTTGAAGTACTCGCCCGGCATGGTCGGAGAATGGA
GGACAAGACTGGAGGGTTAGTAGG