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Detailed information on CNT30727221


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 8e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618415Corchorus capsularisSesamum indicum29.1120.9983.21131forward
CNT3084635Corchorus capsularisVigna radiata25.5614.5983.48115forward
CNT30552975Corchorus capsularisOryza glaberrima20.2215.6984.6291forward
CNT30331344Corchorus capsularisDioscorea rotundata21.3314.1486.4696forward

Expression of CNT30727221

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MLPPTKRPKVTAGLTWPPEMLAAIETATKRPKTSVEMNSANPCLRVPG*

>peptide 2 (32 aa)
MIKIKRWGEVGSVCLREKRVFLVSGLVSTSQL*

Sequence

>CNT30727221
CGGAAATAACTGAAATGGAGAGCTTGCTTACCCAGCCGGCGGTGGCGAATTCGAGTAAAAAGCAAGCGACGATAGAACCGAGGAGTTGAGCGATGATGTA
GACGAGACCACGGAAGAGAGTGATGTTACCGCCGACGAAAAGGCCGAAGGTGACGGCAGGGTTGACGTGGCCACCGGAAATGTTGGCGGCAATTGAGACA
GCGACGAAAAGGCCGAAGACGAGTGTTGAGATGAACTCAGCCAACCCTTGCTTAAGAGTACCGGGGTGAGTTGCCTCCTCGAACCGGCCGACGGCGATGT
TTCTGATCGGCATGTTTACCGTATGATCAAAATCAAGCGGTGGGGGGAAGTGGGGAGTGTTTGTTTGAGAGAGAAGAGAGTGTTTTTGGTCTCTGGTCTG
GTCTCCACTTCTCAGCTTTAGCTCCTACTTATATTTGAAACGGGTGGTCC