CANTATAdb - search

Detailed information on CNT30573925

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30315800	Vitis vinifera	Corylus avellana	25.55	45.43	85.65	209	forward
CNT30516897	Vitis vinifera	Juglans regia	47.92	44.34	82.65	392	forward
CNT3091613	Vitis vinifera	Solanum tuberosum	75.43	81.61	80.39	617	forward
CNT30468540	Vitis vinifera	Saccharum spontaneum	40.83	38.57	81.14	334	forward
CNT30606053	Vitis vinifera	Gossypium raimondii	44.87	60.76	82.56	367	forward
CNT30350933	Vitis vinifera	Eragrostis tef	37.16	38.83	79.93	304	forward
CNT30620207	Vitis vinifera	Cajanus cajan	42.79	16.29	81.71	350	forward
CNT30642003	Vitis vinifera	Cannabis sativa	46.7	56.01	80.37	382	forward

Expression of CNT30573925

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MLDCNQERSGYMPERWGCMMERLDYKKVRLGYRMVRLGYRKVRWGCKQEKWGCMQEKWGCMRVMLGCRQEKLDCNLEK*

Sequence

>CNT30573925
GCTTGATGGAGATAGTCTTGGACTGCTGGGAGAATATGCCAGTGATGGGCTGTATTTTGCTGAGGAAGGATTATAACTAGGTGATGTAGGGCTGTAGCTT
GGAGAGGTGGGACTGTAGCTAGGAGATGTTGGACTGTAACCAGGAGAGGTCGGGCTATATGCCGGAGAGGTGGGGCTGTATGATGGAGAGGTTGGACTAT
AAGAAGGTGAGGTTGGGCTATAGGATGGTGAGGTTGGGCTATAGGAAGGTGAGGTGGGGCTGTAAGCAGGAGAAGTGGGGCTGTATGCAGGAGAAGTGGG
GCTGTATGAGGGTGATGTTGGGCTGTAGACAGGAGAAGTTGGACTGTAACTTGGAGAAGTAGGACTGTAGCTTGGAGATGTAGGACTGTAACTGGGAGAT
GTGGGGCTGTAGCTGGGGGATGTGGGGCTGTAGCTGGGTGAGGTTGGACTGTAGCCAGGAGAAGTAGGGCTATAACCAGGAGATGATGGACTATATCCTG
GAGAAGATGGACTGTAACCTGGTGACGATGTAGGAGAGAATGCCATGCCCCCAACATAAGGAGAAAATTGTGCATCTGTAATTGGTGACAGACGAAGATT
TGGGCTCAGCAAGTAATTTGGTGACATCATGCCATCATGATATGGAGTACCCGTGATTGGTGAACGGGAAGGTGTCATGCCAAAATCCAAACCTTCCATA
TAACTTGGGAGCTGAAGTTCTATAGCATGCTGAAGCATCTGATCATTTAGGTACAGGGCACAATCTCCTGTACCAATGGGTGCCAGCTGACCTAACATGA
TATTTTCTGTAACACCCC