Detailed information on CNT30642003


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516897Cannabis sativaJuglans regia52.7940.7282.5360forward
CNT30628928Cannabis sativaVigna unguiculata48.3966.1379.7330forward
CNT30606053Cannabis sativaGossypium raimondii55.7262.9181.05380forward
CNT30620207Cannabis sativaCajanus cajan53.5216.9881.92365forward
CNT30154708Cannabis sativaPrunus persica43.5590.2786.2297forward
CNT30573925Cannabis sativaVitis vinifera56.0146.780.37382forward
CNT30114394Cannabis sativaFicus carica3944.7186.47266forward

Expression of CNT30642003

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MMDCILLIEDCNLEMLDYNLVRLDYNQEKLDCRLVKLDCRTEM*

Sequence

>CNT30642003
CTGTAATTTGGAGATGTAGGACTATAAGGACTGGCTGGTGGCAACCTCGGACTGCTTGGAGAATAAGCCAATGATGGACTGTATTTTGCTGATTGAGGAT
TGTAACTTGGAGATGTTGGACTATAACTTGGTGAGGTTGGACTATAACCAGGAGAAGTTGGACTGTAGGCTGGTGAAGTTGGACTGTAGGACGGAGATGT
AGGGCTGTAGGACGGTGATGTTGGGCTGTAGGACGGTGATGTAGGGCTGTAAGAAGGTGAGGTGGGACTATATCCAGGTGAAGTTGGGCTATAACCAGGG
GAAGTTGGACTATATCCAGGGGAAGATGGGCTATAGCCTGGAGATGATGGGCTGTAACCAGGGGATGAAGTAGGTGAAAACGCCATTGTTCCAGCATATG
GCGAGAATTGCGCATCAGTAATGGGAGACAGACGGAGATTTGGGCTCAGCAGATAGTTTGGTGACATCAAACCATCATGGTAAGGAGTGGCCGACATTGG
AGAACGTGAAGGTGTCATACTAAAATCAAGGCCCTCCATATAACTAGGTAGCTGCAGTTCAATAGCATTTTTCAGCATCTCATCATTGAGATACAAGGTA
GGTGCTCCTGTACCAATAGGAGCCAGCTGACCTAACATTATATTTTCAGTCACACCCCTCAAACAATCTGTTTCAGCATACA