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Detailed information on CNT30237809


BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 4e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616399Brassica oleraceaSesamum indicum66.3151.482.61368forward
CNT3017528Brassica oleraceaZea mays24.6843.9185.4137forward
CNT30606053Brassica oleraceaGossypium raimondii59.8254.9781.63332forward
CNT30648676Brassica oleraceaRosa chinensis21.816.2490.91121forward
CNT30620207Brassica oleraceaCajanus cajan45.5911.7783.4253forward
CNT30574226Brassica oleraceaVitis vinifera38.242.4883.02212forward

Expression of CNT30237809

Peptides detected in this lncRNA

>peptide 1 (34 aa)
GCTQVKLGCMQVTLGCMQVTLGCNSGMSGCSLVM*

>peptide 2 (98 aa)
MKDLLENNQGLLGCTWAKWDYSQEKSDCIQGMMGCSLEMKKEKTPFHLHMEKTEHLTLETTAYLDSRGSLGTSCFHGKEFLTLVSEQESSQTPVHPYS*

Sequence

>CNT30237809
GGGCTGTACGCAGGTGAAGTTGGGCTGTATGCAGGTGACGTTGGGCTGTATGCAGGTGACGTTGGGCTGTAACTCGGGGATGTCGGGCTGTAGCTTGGTG
ATGTAGGACTGTAGCTAGGAGAAGTTGGGCTGTAGCTAGGAGACGTTGGGCTGTAGCTAGGGGAGGTGGGAGAATATGAAGGACTTGTTGGAGAATAACC
AGGGCTTGTTGGGCTGTACGTGGGCGAAGTGGGACTATAGCCAGGAGAAGTCGGACTGTATCCAGGGGATGATGGGCTGTAGCCTGGAGATGAAGAAGGA
GAAAACGCCATTCCACCTACATATGGAGAAAACTGAGCATCTGACATTGGAGACAACCGCATATTTGGACTCAAGAGGTAGTTTGGGGACATCATGCTTT
CATGGTAAGGAGTTCCTGACATTGGTGAGCGAGCAGGAGTCATCCCAAACTCCAGTCCATCCATATAGCTAGGGAGCTGAAGTTCAATTGCATTCTTCAG
CATCTCATCATTCAGATACAGCTCGCAGTCTCCTGTTCCAATTGGTGCAAGCTGG