Detailed information on CNT30315800


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 7e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549166Corylus avellanaIpomoea triloba59.7840.9281.45275forward
CNT30606053Corylus avellanaGossypium raimondii45.8734.9386.26211forward
CNT30620207Corylus avellanaCajanus cajan41.528.8986.39191forward
CNT30354733Corylus avellanaLactuca sativa42.1722.0581.96194forward
CNT30408809Corylus avellanaPapaver somniferum83.4844.4481.77384forward
CNT30573925Corylus avellanaVitis vinifera45.4325.5585.65209forward
CNT3051605Corylus avellanaAmborella trichopoda39.5727.4584.07182forward
CNT30330867Corylus avellanaDioscorea rotundata85.8754.6378.73395forward

Expression of CNT30315800

Peptides detected in this lncRNA

>peptide 1 (34 aa)
GCKMGKWGCMPVMWGCMLAKWGCMLGKWGCNLER*

>peptide 2 (40 aa)
MSGTLGYTLERWGCTQGRWGYTQGMTDYSPEMRGCSPVMM*

Sequence

>CNT30315800
GGGCTGTAAGATGGGGAAGTGGGGCTGTATGCCGGTGATGTGGGGCTGTATGCTGGCGAAGTGGGGCTGTATGCTGGGGAAGTGGGGCTGTAACTTGGAG
AGGTAGGGCTGTAAGTTGGAGATGTTGGGCTGTAGCTGGGAGAGGTAGGCGAGTAAGATGGACTTGTAGGAGAATAGGCAGGACTGGTTGGGCTATAGCC
CGGAGAACTAGGGCTATATGTCGGGGACGTTGGGCTATACCCTGGAGAGGTGGGGCTGTACCCAGGGGAGGTGGGGCTATACCCAGGGGATGACGGACTA
TAGCCCGGAGATGAGGGGCTGTAGCCCGGTGATGATGTAGGAGAAAAAGCCATTCCACCAACATAAGGAGAAAACTGAGCATCCGTAATGGGTGACAGAC
GGAGATTTGGGCTCAGCAAATAATTTGGAGACATCAAGCCCTCATGATATGGAGTTCCTG