Detailed information on CNT30586560


BLAST search results

BLAST vs Swiss-Prot:
sp|P32957|CYSP4_VASCU, E-value = 1e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30454273Musa acuminataSaccharum spontaneum10.2868.283.78148forward
CNT30596150Musa acuminataOryza meridionalis12.2374.5882.95176forward
CNT30370131Musa acuminataOryza glumipatula12.2383.8183.52176forward

Expression of CNT30586560

Peptides detected in this lncRNA

>peptide 1 (29 aa)
HDKGGHQTSLEHHPQTTKQQEKKGVASFK*

>peptide 2 (32 aa)
MSFTKSQNRRKGETSQGGKKKRGKDRSSCKCN*

>peptide 3 (29 aa)
MRPSSGGTWRPGRLDTWPGTPRWSGRRTG*

>peptide 4 (43 aa)
MKISAPTAAALIFNADNSALLPPIDGIRQIIAVPQPVPVAALR*

>peptide 5 (42 aa)
MYKSGTAEAIAAAAKRRRKMIAEAMRRERRISSSRLTTPGLVI

>peptide 6 (64 aa)
MGVDVAEVVLEHLEPARLFRERVAGRPVLGHPLQVEQTHLFLAPPGHLLAVALPAGHHVQVGDS*

Sequence

>CNT30586560
CATGACAAAGGTGGGCACCAAACCTCATTAGAACATCACCCACAAACAACAAAGCAACAGGAAAAAAAGGGGGTTGCTAGTTTCAAATGACTAATCAATA
GGTCACCCTGTAAGTATCGCAAGTTCCATCTCGGGCCTTGTATGGGTAGTCCTCATCGGTGTCGATACCACCATTGTTGATGATGAACTCAAAGGCATAA
TCCATGAGCCCCCCGTTGCAGCCCTGGTTGTAGTAGGTGTCACAGTCCACCAATTCCTGCTCGGACAGAGAGATCAGGTCGCCAGTCACGATCTGGTTGA
TACCTTCCACAGCAGCAATCGTCGAAAATGCCCAGCAGCTCCCTGTGACACCATCAGATCTAGATATCATCAGCATGCCAATTCAGATCTTTGAAACCAA
AAAAATCCTTCATTGGTGACTTGATCTAACAGGATAAGATCCTGAATCATGAACTAAGTGTGATACTAGCAGTTAATAGTTTTGTAGAGTAAGCAAAATT
TACACAAGAAGGGGGGGCTGAAACAGATGAATCATGAACTACATGTGATACTAGCAGTAAATAATTTTGTAGAGTAAGCAAAGTTTACACAAAAAAGAGG
GGCTGAAACAGAATCTGAAAGCAGATCTACTCGAAGATCATCCAAAATACAACACCTTTAGTACATCGTAGGAAGCAAAATCATGTCGTTTACCAAAAGT
CAAAACCGAAGAAAAGGGGAAACTTCACAAGGAGGGAAAAAAAAGAGAGGAAAAGATCGATCTTCATGTAAATGTAATTAAATGAAAATAATATCAGATT
TAAAGTGTTATTAGCAGAAAGCAAACAGAACAATAGAGCAGAAATTGCAACTAATTGAAGTCAACGCAGGGAGAAATGAAAATATCAGCACCCACCGCAG
CTGCCTTGATCTTTAACGCCGACAACAGCGCCCTTCTCCCTCCAATCGATGGAATCAGGCAAATAATCGCCGTCCCTCAGCCGGTACCGGTTGCTGCCCT
CCGATGAGGCCCTCCTCCGGCGGGACGTGGCGGCCCGGACGCCTAGATACTTGGCCCGGTACTCCTCGTTGGTCAGGGCGGCGAACCGGTTGAGGCCAAG
GCGGAAGGCGTGCTCCCCGCGGTCGGCCGCCGCGTTATGGGCGTCGATGTAGCGGAGGTTGTCCTTGAACACCTCGAACCTGCTCGCCTCTTCCGCGAGC
GCGTTGCGGGACGGCCGGTGCTTGGCCACCCACTCCAGGTAGAGCAGACGCACCTCTTCCTCGCTCCGCCCGGACACCTGCTCGCTGTGGCCCTCCCCGC
TGGTCACCATGTACAAGTCGGGGACAGCTGAGGCGATCGCCGCCGCGGCCAAGAGGAGAAGGAAGATGATAGCAGAAGCCATGAGGAGGGAGAGGAGGAT
ATCTTCTTCAAGATTAACCACTCCAGGGCTTGTTATATA