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Detailed information on CNT30585090


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221493Echinochloa crusgalliHordeum vulgare7.1949.686.99123forward
CNT30586416Echinochloa crusgalliMusa acuminata12.2736.2183.33210forward
CNT30553550Echinochloa crusgalliOryza glaberrima7.7755.6588.72133forward
CNT30466088Echinochloa crusgalliSaccharum spontaneum11.472.4993.85195forward
CNT30227445Echinochloa crusgalliAnanas comosus2.6320.8393.3345forward
CNT30365871Echinochloa crusgalliSorghum bicolor6.4933.6492.79111forward
CNT30596150Echinochloa crusgalliOryza meridionalis12.1688.1491.83208forward
CNT30370131Echinochloa crusgalliOryza glumipatula11.5794.2991.41198forward
CNT30116501Echinochloa crusgalliOryza nivara6.225.9291.51106forward
CNT30558531Echinochloa crusgalliPanicum hallii10.9975.594.15188forward

Expression of CNT30585090

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDQLTAASLVLDLCDGALGPPVDGFRQLLVVGG*

>peptide 2 (42 aa)
PVDIAAVVSALVRVVLLCVDSTIVDDELKRVVHQTSIAPLVV*

>peptide 3 (72 aa)
MCRYFFEETCADTNPNYCNLTNTSRLHNFPIIKDQTNKPVESSLVLELRRTIAFSSRRGIKNGSAYRSFPGP*

>peptide 4 (50 aa)
MPSTAAIVEKAQQLPERDRQRSDFNTSMSSIPPLYFTNQFKMYASNDTKV*

>peptide 5 (46 aa)
MNLLPSICPPSCKTIKINTIHLSLLPPVLIHVISSYTNRQIEMNFN*

>peptide 6 (56 aa)
MSAAAARVTSSSSAAAAASDAVEEVPISAAPRRLAEEEEEQVDEREQSQRGRRWRPP

>peptide 7 (54 aa)
MQNHKDQYNTSVTPASRIDTCDFQLYQQTNRNEFQLEKGLQVQRIIPQLGLELI*

Sequence

>CNT30585090
CCTGTTGACATCGCAGCGGTTGTCAGTGCCCTTGTAAGGGTAGTCCTCCTCTGTGTCGATTCCACCATTGTTGATGATGAACTCAAACGCGTAGTCCATC
AGACCTCCATTGCACCCCTGGTTGTATGAAGTGTCACAGTCAACAAGCTCTTGCTCAGACAAGGAGATCAGGTCGCCTGTAACAATCTGGTTGATGCCTT
CCACAGCTGCTATTGTTGAGAAAGCCCAGCAACTCCCTGAAAGAGATAGACAAAGATCAGATTTCAACACCAGTATGTCATCAATACCACCGTTATATTT
TACTAATCAATTCAAAATGTACGCAAGCAATGACACAAAGGTATAAAATATAGTGACAGATACTTGATGGGAAATATCTTTTATGCATATACTATTTTTT
ATTAAAAGAAGAAATTGGTGGTGATGAACAGGAAGCAGACGAAGACATGTGACCAATAGGAACGTAAAGCGGCCACAAGAGCCGTGATGAAAATCGTTTC
CAACATCCTATCAGGAACCATGTAGTGAGCTTGGCTAATAAGAGAAAAAAGGACTAATTGGTCCATCAGCCTTATCAAGTTGACAAGGACCGCTATTGGT
TCAAGGACGGTCACTGGAGTTCACAAGGAGCAAACGGCAGTGGAGTCCACGTTCGATGAACCTACTTCCTAGTATCTGTCCCCCTTCATGCAAAACCATA
AAGATCAATACAATACATCTGTCACTCCTGCCTCCCGTATTGATACATGTGATTTCCAGTTATACCAACAGACAAATAGAAATGAATTTCAATTAGAAAA
AGGTTTGCAGGTACAAAGAATCATCCCACAACTTGGCTTAGAACTGATATAAACTACTCCAGTAACCAAAATAGAATATCATGATTTAGGAATTTTATTT
ATTATATTTGTTTCTACGTATATGGTTGGAATTCAGAAATTTATATGTGCGCCATGTTTGCAATCTCCGTTCATTTCGAGGCGTGACTAACTAGCTGCAT
AAGCTGGCCGTTGAACTTCAGGTAGAAGATACAAATCTCGTACTTTGATGTTCGATCATGTGCAGATACTTTTTTGAGGAAACCTGTGCAGATACTAATC
CAAACTACTGCAATTTGACGAATACTAGTAGGCTTCACAATTTCCCGATAATCAAGGACCAAACAAATAAGCCCGTAGAATCTTCCCTTGTTCTAGAATT
ACGGAGGACGATAGCTTTTAGCAGCAGGAGAGGAATAAAAAATGGATCAGCTTACCGCAGCTTCCCTGGTCCTTGACCTCTGCGACGGCGCCCTTGGTCC
TCCAGTCGACGGATTCCGGCAGCTCCTCGTCGTCGGCGGCTAGGTACCTGGCGCTGAGCTTCCTCTCCCTCTGCGGCTTGGCCCTGACGCCGAGGTAGGT
GGCGCGGTACTCCTCGTTGGTGAGGTCGGCGAAGCGGTTGAGCCCGAGGGCGTTGTAGGTCCGGCCGTGCGTGGCCATCCACTCCGCGTACATCCGCCGC
GTCTCCTCCTCGCTCCGCTCGCCGTAGGACACGATCGACATGTCCGCCGCCGCGGCCAGGGTTACCAGCAGCAGCAGCGCCGCCGCCGCCGCGAGCGACG
CCGTAGAGGAGGTACCCATCTCCGCTGCTCCGAGAAGACTAGCCGAGGAGGAGGAGGAGCAGGTGGATGAGAGGGAGCAGAGTCAGAGGGGGAGGAGATG
GAGGCCGCCTT