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Detailed information on CNT3035937


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 1e-39

BLAST vs NONCODE:
NONVVIT001490, E-value = 1e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30586416Cucumis meloMusa acuminata17.3439.4879.04229forward
CNT30454273Cucumis meloSaccharum spontaneum12.4175.5881.71164forward
CNT30596150Cucumis meloOryza meridionalis14.9183.4781.22197forward
CNT30370131Cucumis meloOryza glumipatula12.8780.9582.35170forward
CNT30116501Cucumis meloOryza nivara6.2820.2985.5483forward

Expression of CNT3035937

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MNQVKLIGDKPDWDRKRHLVPCKGNLRRCQFHHCQ*

>peptide 2 (36 aa)
MNLFVRNVTYKYGSHNKFPGKISNDPNTIVKISKTK*

>peptide 3 (37 aa)
MRKRKENTKSKHHSHGINSTKKIKSLKKRERKNKKKTH

>peptide 4 (39 aa)
MWAATVMVITAGTSFIAREVFVAFSWRALPPASIATLTG*

>peptide 5 (44 aa)
MLNDLSQSTSSCSDREINSPVTIWFIPSTAATVEKAQQLPSFQK*

>peptide 6 (45 aa)
DINLFPLLNNFSILWTCVQMVDYFTDDTDHHCQTSQAPTNNFPSF*

>peptide 7 (59 aa)
TSTFFHFLITFLYYGPVFKWSIISLTTPTTIAKPLKHQRTTSQAFESALSDLQEGASAD*

Sequence

>CNT3035937
GACATCAACCTTTTTCCACTTCTTAATAACTTTTCTATACTATGGACCTGTGTTCAAATGGTCGATTATTTCACTGACGACACCGACCACCATTGCCAAA
CCTCTCAAGCACCAACGAACAACTTCCCAAGCTTTTGAATCCGCTTTGTCTGATTTGCAGGAAGGCGCTTCAGCAGATTGACGCCCATCAAGCTGTCTTT
GCTCTGTGTTTCATCCATTTACAATGATTAGATTATATCAAACATGAACTTGAATGACAAAGAACTCGTTGAAGAATGAGCATTGGTTAGAAAACTATGT
GATGTGACGTACCGCTCGGCAAGTTCCTGCCTCAAGGTCACAAACGGGATATTCATGTGGGCAGCAACTGTAATGGTCATCACAGCAGGTACTTCCTTCA
TCGCACGAGAAGTATTCGTCGCATTCAGTTGGAGGGCTCTGCCACCAGCTTCAATTGCAACACTAACTGGTTGATTTGCTACAGCCTTTTTCAAGGAGCT
CTCATCATTCTCAGGAACATCTTCATATCCATCTATGGTTACAACCTTGGCATTTTTCTTTGGACAAAACATTAAAAACCAGTCAAATTACGATAAATGG
TAAGATAAATGAATCAAGTGAAGTTGATTGGGGACAAACCCGATTGGGATCGCAAGCGCCATCTCGTCCCTTGTAAGGGTAATCTTCGTCGGTGTCAATT
CCACCATTGTCAATGATGAACTGGAAAGCATAGTCCATAAGACCACCATTGCAACCCATGTTAAATGATTTGTCACAATCCACAAGTTCCTGCTCTGACA
GAGAGATCAATTCGCCAGTGACAATTTGGTTTATTCCTTCCACTGCAGCAACTGTTGAGAAAGCCCAACAGCTCCCTTCATTCCAAAAATAACCCAATTA
CGTCAATCGCCATCCATCAAAAGCCATTACTAAAACAATCCTTCGAGATAAAAGGTTACTTGGAAAACAAGTTTTGAGCGGAAAGTTTCTAATACGTTTT
CTGATGTTATCGATGGCCATCAACAAATCATCAGAGATGAAGCGAAGCTAATTATAACACATACAAGTTACGATCAAGGTTGAGTATTGACAAATATCTA
ATGAATCTATTTGTGAGAAATGTTACCTATAAATATGGATCTCATAACAAATTTCCTGGGAAAATCAGCAACGACCCAAACACAATAGTCAAAATATCAA
AGACCAAATGAGAAAACGAAAAGAAAACACAAAATCCAAGCATCATTCTCATGGGATCAATTCAACAAAAAAAATTAAAAGTTTAAAAAAAAGAGAGAGA
AAAAATAAAAAGAAAACTCAC