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Detailed information on CNT30580944


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30452183Echinochloa crusgalliSaccharum spontaneum92.2591.5387.66940forward
CNT3013388Echinochloa crusgalliZea mays76.5599.6286.03780forward
CNT30362762Echinochloa crusgalliSorghum bicolor92.1587.8487.54939forward
CNT30593715Echinochloa crusgalliEragrostis curvula64.8774.4483.66661forward

Expression of CNT30580944

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLPFSSRSWPSPVLRAASGDPPVETQLPAYGPQHTL*

>peptide 2 (51 aa)
MHLLVGVVVRTYELRYPIYRCSQSLQNRAITRLQSLASSVVVMSFISDFFS*

>peptide 3 (52 aa)
MMHGKGKLWRMLRGKGRRWRMRCGKGKWWHMRCGKESGQMWWELGKKTRTCC*

Sequence

>CNT30580944
AAGGTAGACTAAAAACATTAAGTCCATGGTACATCCAGTTTTAATAAGGATTACATGCTGATTTTTTTGGTTTTTTCCCACAGTTCCAAATAGAATTACA
TAAGGCGACAATGAGAGTCTCGCTGATACCATACATAATTTACATCCAGGTTCCTTAGTAGTAGTAAAAAGTAGTGATCTAGGATGAGACGAGTGCTAAC
ACAACAAAATGCATCTACTAGTAGGGGTGGTGGTAAGAACATATGAGCTGAGATACCCAATCTACCGTTGTAGTCAGTCACTACAAAATAGGGCCATTAC
GCGATTGCAGTCGTTGGCATCATCAGTTGTTGTCATGTCATTCATCAGCGACTTTTTTTCCTGACTGAACCTCTACCGGTAGTAAGCCTGGTGGAAGGCA
GGAGCCATTCCACTGTTGTAAGCTGCCATACCGTTGCCATACCCACCATAGGGGGCAGGGTAGCTCATGGGTGGGGTGGAGTATGGCATCGCAATGCCGA
CATTTACGCTGGCTACTTCTTCAGCAGGGTAAACATATGGCTCTCTGAAGGCCGGTGGGCTCCGGTTGCAGTATACATGACCAACCGGCCTGTCATAAGG
GTAAGGGGAGGCAGTGGCGTATGATGCATGGGAAGGGGAAGCTGTGGCGTATGTTGCGTGGGAAGGGGAGGCGGTGGCGTATGAGGTGTGGGAAGGGGAA
GTGGTGGCATATGAGGTGTGGGAAGGAGAGCGGGCAAATGTGGTGGGAGCTGGGAAAGAAGACACGGACGTGTTGTTAGTTCGACCTGCCTTGGCAAGAG
GCATTGGGCCTCCATTGCTTGCACGGATACGCTTGGTTGCAGGTCCACTGCTGCCGCCACTAGAAGCACTTGATGCTGCCTTTTTCTTCTCGGTCTTGGC
CTTCTCCAGTTCTTCGAGCTGCTTCCGGAGATCCTCCAGTGGAAACTCAGCTTCCAGCTTACGGTCCTCAACACACTTTATAACAGCTCTCAGCGCAGAC
TGCTCTTTCTTGTTCACAT