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Detailed information on CNT30496504


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30143000Digitaria exilisLolium perenne74.7775.3179.56729forward
CNT30593715Digitaria exilisEragrostis curvula45.9550.4584.15448forward

Expression of CNT30496504

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMHGMGRLWHMRCGKGKWWHVRCETESEQMWWELGKRTQTHC*

>peptide 2 (29 aa)
NTALIKSKVHKDYMLTFFFSSSKENCRVT*

>peptide 3 (36 aa)
MSLSSSRSWPSPALQAASGDPPVEIQLPVSGPQHTL*

>peptide 4 (31 aa)
MSFISDFFFLTEPTGSKPGGRQEPFHCCKLP*

Sequence

>CNT30496504
AACACGGCTTTAATTAAGTCCAAGGTACATAAGGATTACATGCTCACCTTTTTTTTTTCTAGTTCCAAAGAGAATTGTAGAGTTACATAAGGCGACAACA
AAAGTCTCACTGATACCATACATAATTTACATCCAGGCTCCTTAGTAGTAGTAAAAAAAGTAGTGGTCTAGGATGAGACGATTGCTAATACAACACATCT
AATAGTAGTTGTAAGAACATATGAGCTGAGATACCAATCTACCGTTGTAGTCAGTCACTACAAAATAGGGCCATTGCGCAATTGAGTCGTTGGCATCATT
AGTTGTTGTCATGTCATTCATCAGCGACTTTTTTTTCCTGACTGAACCTACCGGTAGTAAGCCTGGTGGAAGGCAGGAGCCATTCCATTGTTGTAAGCTG
CCATAGCATTCCCATACCCGGCATAGGGGGCAGGGTAGCTCATGGGTGGGGCTGCATATGGCATGGCAATGCCAACATTGACACTCGCTACTTCCTCGGC
TGGGTAAACATATGGCTCCCTAATAGCCGGTGGGCTCCGGTTGCAGTAGAGGCCATGTCCAGCGGGCCTGTCATAAGGGTAAGGGGAGGCGGTGGCGTAT
GATGCATGGGATGGGGAGGCTGTGGCATATGAGGTGTGGGAAGGGGAAGTGGTGGCATGTGAGGTGTGAGACGGAGAGCGAGCAAATGTGGTGGGAGCTG
GGAAAGAGGACACAGACACATTGTTAGTTAGACGACCTGCCTTGGCAGGAGGCATTGGACCTCCAGTGTTTGCACGTATACGCTTGGTTGCAGGGCCGCT
GCTGCCGCCACTAGAAGCACTTGATGTCTCTTTCTTCTTCTCGGTCTTGGCCTTCTCCAGCTCTTCAAGCTGCTTCCGGAGATCCTCCAGTGGAAATTCA
GCTTCCAGTTTCCGGTCCTCAACACACTTTATAACAGCTCTCAGCGCTGATTGCTCTTTCTTGTTAACATTGCTC